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Bio::EnsEMBL::Compara::Filter::Greedy Class Reference

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Class Summary

Definition at line 5 of file Greedy.pm.

Available Methods

public Array filter ()

Method Documentation

public Array Bio::EnsEMBL::Compara::Filter::Greedy::filter ( )
    Title   :   filter
    Usage   :   filter(\@)
    Function:   Clean the Array of Bio::EnsEMBL::FeaturePairs in three steps, 
                First, determines the highest scored hit, and fix the expected strand hit
                Second, hits on expected strand are kept if they do not overlap, 
                either on query or subject sequence, previous strored, higher scored hits.
                If hit goes trough the second step, the third test makes sure that the hit
                is coherent position according to previous ones. 
    Returns :   Array reference of Bio::EnsEMBL::FeaturePairs
    Args    :   Array reference of Bio::EnsEMBL::FeaturePairs
 
Code:
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The documentation for this class was generated from the following file: