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Bio::EnsEMBL::Compara::RunnableDB::Ortheus Member List
This is the complete list of members for Bio::EnsEMBL::Compara::RunnableDB::Ortheus, including all inherited members.
_add_to_cluster()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_add_to_different_cluster()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_add_to_same_cluster()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_build_2x_composite_seq()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_build_tree_string()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_cluster_regions()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_create_block_frag_array()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_create_span_frag_array()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_dump_2x_fasta()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_dump_fasta()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_extract_sequence()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_find_longest_region_in_cluster()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_in_cluster()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_load_2XGenomes()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_load_DnaFragRegions()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_merge_clusters()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_print_cluster()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_trim_gab_left()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_trim_gab_right()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_update_tree()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_write_gerp_dataflow()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
_write_output()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
analysis()Bio::EnsEMBL::Hive::Process
catch()Bio::EnsEMBL::Utils::Exception
check_if_exit_cleanly()Bio::EnsEMBL::Hive::Process
compara_dba()Bio::EnsEMBL::Compara::RunnableDB::BaseRunnable
data_dbc()Bio::EnsEMBL::Hive::Process
dataflow_output_id()Bio::EnsEMBL::Hive::Process
db()Bio::EnsEMBL::Hive::Process
dbc()Bio::EnsEMBL::Hive::Process
debug()Bio::EnsEMBL::Hive::Process
deprecate()Bio::EnsEMBL::Utils::Exception
DESTROY()Bio::EnsEMBL::Hive::Process
dnafrag_regions()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
fasta_files()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
fetch_input()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
get_species_tree()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
go_figure_compara_dba()Bio::EnsEMBL::Compara::RunnableDB::BaseRunnable
go_figure_dbc()Bio::EnsEMBL::Hive::Process
info()Bio::EnsEMBL::Utils::Exception
input_dir()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
input_id()Bio::EnsEMBL::Hive::Process
input_job()Bio::EnsEMBL::Hive::Process
new()Bio::EnsEMBL::Hive::Process
options()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
output()Bio::EnsEMBL::Hive::Process
param()Bio::EnsEMBL::Hive::Process
param_defaults()Bio::EnsEMBL::Hive::Process
param_substitute()Bio::EnsEMBL::Hive::Process
parameters()Bio::EnsEMBL::Hive::Process
parse_results()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
queen()Bio::EnsEMBL::Hive::Process
remove_empty_cols()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
run()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
runnable()Bio::EnsEMBL::Hive::Process
species_order()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
stack_trace()Bio::EnsEMBL::Utils::Exception
stack_trace_dump()Bio::EnsEMBL::Utils::Exception
strict_hash_format()Bio::EnsEMBL::Hive::Process
synteny_region_id()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
throw()Bio::EnsEMBL::Utils::Exception
tree_string()Bio::EnsEMBL::Compara::RunnableDB::Ortheus
try()Bio::EnsEMBL::Utils::Exception
verbose()Bio::EnsEMBL::Utils::Exception
warning()Bio::EnsEMBL::Hive::Process
worker()Bio::EnsEMBL::Hive::Process
worker_temp_directory()Bio::EnsEMBL::Hive::Process
write_output()Bio::EnsEMBL::Compara::RunnableDB::Ortheus