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Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates Member List
This is the complete list of members for Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates, including all inherited members.
analysis()Bio::EnsEMBL::Hive::Process
assign_jobID_to_genomic_align_block()Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates
catch()Bio::EnsEMBL::Utils::Exception
check_if_exit_cleanly()Bio::EnsEMBL::Hive::Process
compara_dba()Bio::EnsEMBL::Compara::RunnableDB::BaseRunnable
data_dbc()Bio::EnsEMBL::Hive::Process
dataflow_output_id()Bio::EnsEMBL::Hive::Process
db()Bio::EnsEMBL::Hive::Process
dbc()Bio::EnsEMBL::Hive::Process
debug()Bio::EnsEMBL::Hive::Process
deprecate()Bio::EnsEMBL::Utils::Exception
DESTROY()Bio::EnsEMBL::Hive::Process
fetch_input()Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates
filter_duplicates()Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates
find_edge_artefacts()Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates
find_identical_matches()Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates
genomic_align_blocks_identical()Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates
genomic_align_blocks_overlap()Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates
go_figure_compara_dba()Bio::EnsEMBL::Compara::RunnableDB::BaseRunnable
go_figure_dbc()Bio::EnsEMBL::Hive::Process
info()Bio::EnsEMBL::Utils::Exception
input_id()Bio::EnsEMBL::Hive::Process
input_job()Bio::EnsEMBL::Hive::Process
new()Bio::EnsEMBL::Hive::Process
output()Bio::EnsEMBL::Hive::Process
param()Bio::EnsEMBL::Hive::Process
param_defaults()Bio::EnsEMBL::Hive::Process
param_substitute()Bio::EnsEMBL::Hive::Process
parameters()Bio::EnsEMBL::Hive::Process
print_gab()Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates
print_params()Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates
process_overlap_for_chunk_edge_truncation()Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates
queen()Bio::EnsEMBL::Hive::Process
remove_deletes_from_list()Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates
remove_edge_artifacts_from_genomic_align_block_list()Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates
removed_equals_from_genomic_align_block_list()Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates
run()Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates
runnable()Bio::EnsEMBL::Hive::Process
sort_alignments()Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates
stack_trace()Bio::EnsEMBL::Utils::Exception
stack_trace_dump()Bio::EnsEMBL::Utils::Exception
strict_hash_format()Bio::EnsEMBL::Hive::Process
throw()Bio::EnsEMBL::Utils::Exception
try()Bio::EnsEMBL::Utils::Exception
verbose()Bio::EnsEMBL::Utils::Exception
warning()Bio::EnsEMBL::Hive::Process
worker()Bio::EnsEMBL::Hive::Process
worker_temp_directory()Bio::EnsEMBL::Hive::Process
write_output()Bio::EnsEMBL::Compara::RunnableDB::PairAligner::FilterDuplicates