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Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree Member List
This is the complete list of members for Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree, including all inherited members.
_binarize()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
analysis()Bio::EnsEMBL::Hive::Process
binarize()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
catch()Bio::EnsEMBL::Utils::Exception
check_if_exit_cleanly()Bio::EnsEMBL::Hive::Process
check_tree()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
compara_dba()Bio::EnsEMBL::Compara::RunnableDB::BaseRunnable
data_dbc()Bio::EnsEMBL::Hive::Process
dataflow_output_id()Bio::EnsEMBL::Hive::Process
db()Bio::EnsEMBL::Hive::Process
dbc()Bio::EnsEMBL::Hive::Process
debug()Bio::EnsEMBL::Hive::Process
deprecate()Bio::EnsEMBL::Utils::Exception
DESTROY()Bio::EnsEMBL::Hive::Process
ensembl_timetree_mya_to_distance_to_parent()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
fetch_input()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
fix_ensembl_timetree_mya()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
fix_path()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
fix_zeros()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
fix_zeros_1()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
get_longest_path()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
get_species_tree_string()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
get_taxon_id_from_dbID()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
get_tree_from_db()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
go_figure_compara_dba()Bio::EnsEMBL::Compara::RunnableDB::BaseRunnable
go_figure_dbc()Bio::EnsEMBL::Hive::Process
include_distance_to_parent()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
include_names()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
info()Bio::EnsEMBL::Utils::Exception
input_id()Bio::EnsEMBL::Hive::Process
input_job()Bio::EnsEMBL::Hive::Process
is_binary()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
is_in()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
is_ultrametric()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
mya_to_dtp_1path()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
new()Bio::EnsEMBL::Hive::Process
output()Bio::EnsEMBL::Hive::Process
param()Bio::EnsEMBL::Hive::Process
param_defaults()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
param_substitute()Bio::EnsEMBL::Hive::Process
parameters()Bio::EnsEMBL::Hive::Process
path_length()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
prune_tree()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
queen()Bio::EnsEMBL::Hive::Process
remove_nodes()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
run()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
runnable()Bio::EnsEMBL::Hive::Process
siblings()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
stack_trace()Bio::EnsEMBL::Utils::Exception
stack_trace_dump()Bio::EnsEMBL::Utils::Exception
strict_hash_format()Bio::EnsEMBL::Hive::Process
throw()Bio::EnsEMBL::Utils::Exception
try()Bio::EnsEMBL::Utils::Exception
ultrametrize()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree
verbose()Bio::EnsEMBL::Utils::Exception
warning()Bio::EnsEMBL::Hive::Process
worker()Bio::EnsEMBL::Hive::Process
worker_temp_directory()Bio::EnsEMBL::Hive::Process
write_output()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::CAFESpeciesTree