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Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::NCTreeBestMMerge Member List
This is the complete list of members for Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::NCTreeBestMMerge, including all inherited members.
_store_tree_tags()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::NCTreeBestMMerge
analysis()Bio::EnsEMBL::Hive::Process
calculate_branch_lengths()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::NCTreeBestMMerge
catch()Bio::EnsEMBL::Utils::Exception
check_if_exit_cleanly()Bio::EnsEMBL::Hive::Process
compara_dba()Bio::EnsEMBL::Compara::RunnableDB::BaseRunnable
data_dbc()Bio::EnsEMBL::Hive::Process
dataflow_output_id()Bio::EnsEMBL::Hive::Process
db()Bio::EnsEMBL::Hive::Process
dbc()Bio::EnsEMBL::Hive::Process
debug()Bio::EnsEMBL::Hive::Process
deprecate()Bio::EnsEMBL::Utils::Exception
DESTROY()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::NCTreeBestMMerge
dumpTreeMultipleAlignmentToWorkdir()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::NCTreeBestMMerge
fetch_input()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::NCTreeBestMMerge
get_species_tree_file()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::NCTreeBestMMerge
go_figure_compara_dba()Bio::EnsEMBL::Compara::RunnableDB::BaseRunnable
go_figure_dbc()Bio::EnsEMBL::Hive::Process
info()Bio::EnsEMBL::Utils::Exception
input_id()Bio::EnsEMBL::Hive::Process
input_job()Bio::EnsEMBL::Hive::Process
load_input_trees()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::NCTreeBestMMerge
new()Bio::EnsEMBL::Hive::Process
output()Bio::EnsEMBL::Hive::Process
param()Bio::EnsEMBL::Hive::Process
param_defaults()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::NCTreeBestMMerge
param_substitute()Bio::EnsEMBL::Hive::Process
parameters()Bio::EnsEMBL::Hive::Process
parse_newick_into_nctree()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::NCTreeBestMMerge
queen()Bio::EnsEMBL::Hive::Process
reroot_inputtrees()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::NCTreeBestMMerge
run()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::NCTreeBestMMerge
run_treebest_mmerge()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::NCTreeBestMMerge
runnable()Bio::EnsEMBL::Hive::Process
stack_trace()Bio::EnsEMBL::Utils::Exception
stack_trace_dump()Bio::EnsEMBL::Utils::Exception
store_nctree()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::NCTreeBestMMerge
store_tags()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::NCTreeBestMMerge
strict_hash_format()Bio::EnsEMBL::Hive::Process
throw()Bio::EnsEMBL::Utils::Exception
try()Bio::EnsEMBL::Utils::Exception
verbose()Bio::EnsEMBL::Utils::Exception
warning()Bio::EnsEMBL::Hive::Process
worker()Bio::EnsEMBL::Hive::Process
worker_temp_directory()Bio::EnsEMBL::Hive::Process
write_output()Bio::EnsEMBL::Compara::RunnableDB::ncRNAtrees::NCTreeBestMMerge