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Bio::EnsEMBL::Compara::StableId::Adaptor Class Reference

List of all members.


Class Summary

Synopsis

Description

    All database I/O should be done via this class,
    which has a general functionality of an adaptor, but strictly speaking isn't.
 

Definition at line 21 of file Adaptor.pm.

Available Methods

protected _get_db_version ()
protected _get_mapping_session_id ()
public dbh_from_dgsuffix_dbname ()
public dbname_in_progress ()
public dg_suffix_in_progress ()
public fetch_ncs ()
public guess_dbh ()
public hist_contrib_unit ()
public load_compara_ncs ()
public load_treefam_ncs ()
public new ()
public release_in_progress ()
public source ()
public store_history ()
public store_map ()
public store_tags ()
public treefam_dbh ()

Method Documentation

protected Bio::EnsEMBL::Compara::StableId::Adaptor::_get_db_version ( )

Undocumented method

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protected Bio::EnsEMBL::Compara::StableId::Adaptor::_get_mapping_session_id ( )

Undocumented method

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public Bio::EnsEMBL::Compara::StableId::Adaptor::dbh_from_dgsuffix_dbname ( )

Undocumented method

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public Bio::EnsEMBL::Compara::StableId::Adaptor::dbname_in_progress ( )

Undocumented method

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public Bio::EnsEMBL::Compara::StableId::Adaptor::dg_suffix_in_progress ( )

Undocumented method

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public Bio::EnsEMBL::Compara::StableId::Adaptor::fetch_ncs ( )

Undocumented method

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public Bio::EnsEMBL::Compara::StableId::Adaptor::guess_dbh ( )

Undocumented method

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public Bio::EnsEMBL::Compara::StableId::Adaptor::hist_contrib_unit ( )

Undocumented method

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public Bio::EnsEMBL::Compara::StableId::Adaptor::load_compara_ncs ( )

Undocumented method

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public Bio::EnsEMBL::Compara::StableId::Adaptor::load_treefam_ncs ( )

Undocumented method

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public Bio::EnsEMBL::Compara::StableId::Adaptor::new ( )

Undocumented method

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public Bio::EnsEMBL::Compara::StableId::Adaptor::release_in_progress ( )

Undocumented method

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public Bio::EnsEMBL::Compara::StableId::Adaptor::source ( )

Undocumented method

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public Bio::EnsEMBL::Compara::StableId::Adaptor::store_history ( )

Undocumented method

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public Bio::EnsEMBL::Compara::StableId::Adaptor::store_map ( )

Undocumented method

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public Bio::EnsEMBL::Compara::StableId::Adaptor::store_tags ( )

Undocumented method

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public Bio::EnsEMBL::Compara::StableId::Adaptor::treefam_dbh ( )

Undocumented method

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The documentation for this class was generated from the following file: