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Bio::EnsEMBL::Compara::Subset Class Reference

List of all members.


Class Summary

Description

 

Synopsis

Description

 

Definition at line 17 of file Subset.pm.

Available Methods

public adaptor ()
public add_member ()
public add_member_id ()
public count ()
public dbID ()
public String description ()
public String dump_loc ()
public member_id_list ()
public Reference member_list ()
public new ()
public new_fast ()
public output_to_fasta ()

Method Documentation

public Bio::EnsEMBL::Compara::Subset::adaptor ( )
 Title   : adaptor
 Usage   :
 Function: give the adaptor if known
 Example :
 Returns :
 Args    :
 
Code:
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public Bio::EnsEMBL::Compara::Subset::add_member ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Compara::Subset::add_member_id ( )
  Arg [1]    : $member_id
  Example    :
  Description:
  Returntype :
  Exceptions :
  Caller     :
 
Code:
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public Bio::EnsEMBL::Compara::Subset::count ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Compara::Subset::dbID ( )
  Arg [1]    : int $dbID (optional)
  Example    :
  Description:
  Returntype :
  Exceptions :
  Caller     :
 
Code:
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public String Bio::EnsEMBL::Compara::Subset::description ( )
  Arg [1]    : string $description (optional)
  Example    :
  Description:
  Returntype : string
  Exceptions :
  Caller     :
 
Code:
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public String Bio::EnsEMBL::Compara::Subset::dump_loc ( )
  Arg [1]    : string $dump_loc (optional)
  Example    :
  Description:
  Returntype : string
  Exceptions :
  Caller     :
 
Code:
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public Bio::EnsEMBL::Compara::Subset::member_id_list ( )

Undocumented method

Code:
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public Reference Bio::EnsEMBL::Compara::Subset::member_list ( )
  Arg [1]    : 
  Example    :
  Description:
  Returntype : reference to array of Bio::EnsEMBL::Compara::Member objects
  Exceptions :
  Caller     :
 
Code:
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public Bio::EnsEMBL::Compara::Subset::new ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Compara::Subset::new_fast ( )
  Arg [1]    : hash reference $hashref
  Example    : none
  Description: This is an ultra fast constructor which requires knowledge of
               the objects internals to be used.
  Returntype :
  Exceptions : none
  Caller     :
 
Code:
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public Bio::EnsEMBL::Compara::Subset::output_to_fasta ( )

Undocumented method

Code:
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The documentation for this class was generated from the following file: