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Full Class List
Exhaustive list of all classes in the code
Bio::EnsEMBL::IdMapping::StableIdGenerator::AedesAegypti
Bio::EnsEMBL::AlignStrainSlice
Bio::EnsEMBL::Analysis
Bio::EnsEMBL::DBSQL::AnalysisAdaptor
Bio::EnsEMBL::ApiVersion
Bio::EnsEMBL::IdMapping::Archiver
Bio::EnsEMBL::ArchiveStableId
Bio::EnsEMBL::DBSQL::ArchiveStableIdAdaptor
Bio::EnsEMBL::Utils::Argument
Bio::EnsEMBL::AssemblyExceptionFeature
Bio::EnsEMBL::DBSQL::AssemblyExceptionFeatureAdaptor
Bio::EnsEMBL::AssemblyMapper
Bio::EnsEMBL::DBSQL::AssemblyMapperAdaptor
Bio::EnsEMBL::Utils::AssemblyProjector
Bio::EnsEMBL::DBSQL::AssemblySliceAdaptor
Bio::EnsEMBL::Attribute
Bio::EnsEMBL::DBSQL::AttributeAdaptor
Bio::EnsEMBL::DBSQL::BaseAdaptor
Bio::EnsEMBL::BaseAlignFeature
Bio::EnsEMBL::DBSQL::BaseAlignFeatureAdaptor
Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
Bio::EnsEMBL::IdMapping::InternalIdMapper::BaseMapper
Bio::EnsEMBL::DBSQL::BaseMetaContainer
Bio::EnsEMBL::IdMapping::BaseObject
Bio::EnsEMBL::DensityPlot::BinValue
Bio::EnsEMBL::DensityPlot::BinValueSet
Bio::EnsEMBL::Utils::Converter::bio_ens
Bio::EnsEMBL::Utils::Converter::bio_ens_analysis
Bio::EnsEMBL::Utils::Converter::bio_ens_exon
Bio::EnsEMBL::Utils::Converter::bio_ens_featurePair
Bio::EnsEMBL::Utils::Converter::bio_ens_gene
Bio::EnsEMBL::Utils::Converter::bio_ens_hit
Bio::EnsEMBL::Utils::Converter::bio_ens_hsp
Bio::EnsEMBL::Utils::Converter::bio_ens_predictionExon
Bio::EnsEMBL::Utils::Converter::bio_ens_predictionGene
Bio::EnsEMBL::Utils::Converter::bio_ens_seqFeature
Bio::EnsEMBL::Utils::Converter::bio_ens_transcript
Bio::EnsEMBL::Utils::BiotypeMapper
Bio::EnsEMBL::Utils::BitString
Bio::EnsEMBL::External::BlastAdaptor
Bio::EnsEMBL::IdMapping::Cache
Bio::EnsEMBL::Utils::Cache
Bio::EnsEMBL::ChainedAssemblyMapper
Bio::EnsEMBL::Utils::CigarString
Bio::EnsEMBL::CircularSlice
Bio::EnsEMBL::Utils::CliHelper
Bio::EnsEMBL::DBFile::CollectionAdaptor
Bio::EnsEMBL::Utils::Collector
Bio::EnsEMBL::DBSQL::CompressedSequenceAdaptor
Bio::EnsEMBL::Utils::ConfigRegistry
Bio::EnsEMBL::Utils::ConfParser
Bio::EnsEMBL::Utils::ConversionSupport
Bio::EnsEMBL::Utils::Converter
Bio::EnsEMBL::Mapper::Coordinate
Bio::EnsEMBL::CoordSystem
Bio::EnsEMBL::DBSQL::CoordSystemAdaptor
Bio::EnsEMBL::DataFile
Bio::EnsEMBL::DBSQL::DataFileAdaptor
Bio::EnsEMBL::DBSQL::DBAdaptor
Bio::EnsEMBL::DBSQL::DBConnection
Bio::EnsEMBL::DBEntry
Bio::EnsEMBL::DBSQL::DBEntryAdaptor
Bio::EnsEMBL::DBLoader
Bio::EnsEMBL::DensityFeature
Bio::EnsEMBL::DBSQL::DensityFeatureAdaptor
Bio::EnsEMBL::DensityFeatureSet
Bio::EnsEMBL::DensityType
Bio::EnsEMBL::DBSQL::DensityTypeAdaptor
Bio::EnsEMBL::Map::Ditag
Bio::EnsEMBL::Map::DBSQL::DitagAdaptor
Bio::EnsEMBL::Map::DitagFeature
Bio::EnsEMBL::Map::DBSQL::DitagFeatureAdaptor
Bio::EnsEMBL::DBSQL::DnaAlignFeatureAdaptor
Bio::EnsEMBL::DnaDnaAlignFeature
Bio::EnsEMBL::DnaPepAlignFeature
Bio::EnsEMBL::Utils::EasyArgv
Bio::EnsEMBL::Utils::Converter::ens_bio
Bio::EnsEMBL::Utils::Converter::ens_bio_featurePair
Bio::EnsEMBL::Utils::Converter::ens_bio_seqFeature
Bio::EnsEMBL::IdMapping::InternalIdMapper::EnsemblExonGeneric
Bio::EnsEMBL::IdMapping::InternalIdMapper::EnsemblGeneGeneric
Bio::EnsEMBL::IdMapping::StableIdGenerator::EnsemblGeneric
Bio::EnsEMBL::IdMapping::InternalIdMapper::EnsemblTranscriptGeneric
Bio::EnsEMBL::IdMapping::Entry
Bio::EnsEMBL::Utils::Eprof
Bio::EnsEMBL::Utils::EprofStack
Bio::EnsEMBL::Utils::Exception
Bio::EnsEMBL::Exon
Bio::EnsEMBL::DBSQL::ExonAdaptor
Bio::EnsEMBL::IdMapping::ExonScoreBuilder
Bio::EnsEMBL::External::ExternalFeatureAdaptor
Bio::EnsEMBL::DB::ExternalFeatureFactoryI
Bio::EnsEMBL::Utils::IO::FASTASerializer
Bio::EnsEMBL::Feature
Bio::EnsEMBL::FeaturePair
Bio::EnsEMBL::Utils::IO::FeatureSerializer
Bio::EnsEMBL::DBFile::FileAdaptor
Bio::EnsEMBL::Mapper::Gap
Bio::EnsEMBL::Gene
Bio::EnsEMBL::Utils::VegaCuration::Gene
Bio::EnsEMBL::DBSQL::GeneAdaptor
Bio::EnsEMBL::IdMapping::GeneScoreBuilder
Bio::EnsEMBL::Utils::IO::GFFSerializer
Bio::EnsEMBL::DBSQL::GOTermAdaptor
Bio::EnsEMBL::IdentityXref
Bio::EnsEMBL::Mapper::IndelCoordinate
Bio::EnsEMBL::Mapper::IndelPair
Bio::EnsEMBL::IndividualSlice
Bio::EnsEMBL::IndividualSliceFactory
Bio::EnsEMBL::IdMapping::InternalIdMapper
Bio::EnsEMBL::Intron
Bio::EnsEMBL::Utils::IO
Bio::EnsEMBL::Utils::Iterator
Bio::EnsEMBL::KaryotypeBand
Bio::EnsEMBL::DBSQL::KaryotypeBandAdaptor
Bio::EnsEMBL::Utils::Logger
Bio::EnsEMBL::LRGSlice
Bio::EnsEMBL::Map::MapLocation
Bio::EnsEMBL::MappedSlice
Bio::EnsEMBL::MappedSliceContainer
Bio::EnsEMBL::Mapper
Bio::EnsEMBL::IdMapping::MappingList
Bio::EnsEMBL::Map::Marker
Bio::EnsEMBL::Map::DBSQL::MarkerAdaptor
Bio::EnsEMBL::Map::MarkerFeature
Bio::EnsEMBL::Map::DBSQL::MarkerFeatureAdaptor
Bio::EnsEMBL::Map::MarkerSynonym
Bio::EnsEMBL::DBSQL::MergedAdaptor
Bio::EnsEMBL::DBSQL::MetaContainer
Bio::EnsEMBL::DBSQL::MetaCoordContainer
Bio::EnsEMBL::MiscFeature
Bio::EnsEMBL::DBSQL::MiscFeatureAdaptor
Bio::EnsEMBL::MiscSet
Bio::EnsEMBL::DBSQL::MiscSetAdaptor
Bio::EnsEMBL::DBSQL::OntologyDBAdaptor
Bio::EnsEMBL::OntologyTerm
Bio::EnsEMBL::DBSQL::OntologyTermAdaptor
Bio::EnsEMBL::OntologyXref
Bio::EnsEMBL::Operon
Bio::EnsEMBL::DBSQL::OperonAdaptor
Bio::EnsEMBL::OperonTranscript
Bio::EnsEMBL::DBSQL::OperonTranscriptAdaptor
Bio::EnsEMBL::PaddedSlice
Bio::EnsEMBL::Mapper::Pair
Bio::EnsEMBL::Analysis::PairAlign
Bio::EnsEMBL::PepDnaAlignFeature
Bio::EnsEMBL::Utils::PolyA
Bio::EnsEMBL::PredictionExon
Bio::EnsEMBL::DBSQL::PredictionExonAdaptor
Bio::EnsEMBL::PredictionTranscript
Bio::EnsEMBL::DBSQL::PredictionTranscriptAdaptor
Bio::EnsEMBL::IdMapping::StableIdGenerator::PristionchusPacificus
Bio::EnsEMBL::Analysis::Programs
Bio::EnsEMBL::ProjectionSegment
Bio::EnsEMBL::DBSQL::ProteinAlignFeatureAdaptor
Bio::EnsEMBL::ProteinFeature
Bio::EnsEMBL::DBSQL::ProteinFeatureAdaptor
Bio::EnsEMBL::Utils::Proxy
Bio::EnsEMBL::DBSQL::ProxyDBConnection
Bio::EnsEMBL::DBSQL::ProxySNPAdaptor
Bio::EnsEMBL::Map::Qtl
Bio::EnsEMBL::Map::DBSQL::QtlAdaptor
Bio::EnsEMBL::Map::QtlFeature
Bio::EnsEMBL::Map::DBSQL::QtlFeatureAdaptor
Bio::EnsEMBL::Mapper::RangeRegistry
Bio::EnsEMBL::Registry
Bio::EnsEMBL::RepeatConsensus
Bio::EnsEMBL::DBSQL::RepeatConsensusAdaptor
Bio::EnsEMBL::RepeatFeature
Bio::EnsEMBL::DBSQL::RepeatFeatureAdaptor
Bio::EnsEMBL::RepeatMaskedSlice
Bio::EnsEMBL::Utils::IO::ReportSerializer
Bio::EnsEMBL::IdMapping::ResultAnalyser
Bio::EnsEMBL::Root
Bio::EnsEMBL::Utils::Scalar
Bio::EnsEMBL::Utils::SchemaConversion
Bio::EnsEMBL::IdMapping::ScoreBuilder
Bio::EnsEMBL::IdMapping::ScoredMappingMatrix
Bio::EnsEMBL::Utils::ScriptUtils
Bio::EnsEMBL::Utils::SeqDumper
Bio::EnsEMBL::SeqEdit
Bio::EnsEMBL::SeqFeature
Bio::EnsEMBL::SeqFeatureI
Bio::EnsEMBL::Utils::SeqRegionCache
Bio::EnsEMBL::SeqRegionSynonym
Bio::EnsEMBL::DBSQL::SeqRegionSynonymAdaptor
Bio::EnsEMBL::Utils::Sequence
Bio::EnsEMBL::DBSQL::SequenceAdaptor
Bio::EnsEMBL::IdMapping::Serialisable
Bio::EnsEMBL::Utils::IO::Serializer
Bio::EnsEMBL::SimpleFeature
Bio::EnsEMBL::DBSQL::SimpleFeatureAdaptor
Bio::EnsEMBL::Slice
Bio::EnsEMBL::Utils::Slice
Bio::EnsEMBL::DBSQL::SliceAdaptor
Bio::EnsEMBL::SNP
Bio::EnsEMBL::DBSQL::SOTermAdaptor
Bio::EnsEMBL::SplicingEvent
Bio::EnsEMBL::DBSQL::SplicingEventAdaptor
Bio::EnsEMBL::SplicingEventFeature
Bio::EnsEMBL::DBSQL::SplicingEventFeatureAdaptor
Bio::EnsEMBL::SplicingTranscriptPair
Bio::EnsEMBL::DBSQL::SplicingTranscriptPairAdaptor
Bio::EnsEMBL::Utils::SqlHelper
Bio::EnsEMBL::StableIdEvent
Bio::EnsEMBL::StableIdHistoryTree
Bio::EnsEMBL::IdMapping::StableIdMapper
Bio::EnsEMBL::DBSQL::StatementHandle
Bio::EnsEMBL::Storable
Bio::EnsEMBL::StrainSlice
Bio::EnsEMBL::DBSQL::StrainSliceAdaptor
Bio::EnsEMBL::DBSQL::SupportingFeatureAdaptor
Bio::EnsEMBL::IdMapping::SyntenyFramework
Bio::EnsEMBL::IdMapping::SyntenyRegion
TestUtils
Bio::EnsEMBL::IdMapping::TinyExon
Bio::EnsEMBL::IdMapping::TinyFeature
Bio::EnsEMBL::IdMapping::TinyGene
Bio::EnsEMBL::IdMapping::TinyTranscript
Bio::EnsEMBL::IdMapping::TinyTranslation
Bio::EnsEMBL::TopLevelAssemblyMapper
Bio::EnsEMBL::Utils::VegaCuration::Transcript
Bio::EnsEMBL::Transcript
Bio::EnsEMBL::DBSQL::TranscriptAdaptor
Bio::EnsEMBL::Utils::TranscriptAlleles
Bio::EnsEMBL::TranscriptFactory
Bio::EnsEMBL::TranscriptMapper
Bio::EnsEMBL::IdMapping::TranscriptScoreBuilder
Bio::EnsEMBL::Utils::TranscriptSNPs
Bio::EnsEMBL::DBSQL::TranscriptSupportingFeatureAdaptor
Bio::EnsEMBL::Translation
Bio::EnsEMBL::Utils::VegaCuration::Translation
Bio::EnsEMBL::DBSQL::TranslationAdaptor
Bio::EnsEMBL::UnconventionalTranscriptAssociation
Bio::EnsEMBL::DBSQL::UnconventionalTranscriptAssociationAdaptor
Bio::EnsEMBL::Mapper::Unit
Bio::EnsEMBL::UnmappedObject
Bio::EnsEMBL::DBSQL::UnmappedObjectAdaptor
Bio::EnsEMBL::Upstream
Bio::EnsEMBL::Utils::URI