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Bio::EnsEMBL::RepeatMaskedSlice Member List
This is the complete list of members for Bio::EnsEMBL::RepeatMaskedSlice, including all inherited members.
_calculate_a()Bio::EnsEMBL::Slice
_constrain_to_region()Bio::EnsEMBL::Slice
_get_StructuralVariationFeatureAdaptor()Bio::EnsEMBL::Slice
_get_VariationFeatureAdaptor()Bio::EnsEMBL::Slice
_mask_features()Bio::EnsEMBL::Slice
accession_number()Bio::EnsEMBL::Slice
adaptor()Bio::EnsEMBL::Slice
add_synonym()Bio::EnsEMBL::Slice
alphabet()Bio::EnsEMBL::Slice
assembly_exception_type()Bio::EnsEMBL::Slice
assembly_type()Bio::EnsEMBL::Slice
calculate_pi()Bio::EnsEMBL::Slice
calculate_theta()Bio::EnsEMBL::Slice
centrepoint()Bio::EnsEMBL::Slice
chr_end()Bio::EnsEMBL::Slice
chr_name()Bio::EnsEMBL::Slice
chr_start()Bio::EnsEMBL::Slice
coord_system()Bio::EnsEMBL::Slice
coord_system_name()Bio::EnsEMBL::Slice
dbID()Bio::EnsEMBL::Slice
desc()Bio::EnsEMBL::Slice
display_id()Bio::EnsEMBL::Slice
end()Bio::EnsEMBL::Slice
expand()Bio::EnsEMBL::Slice
get_all_AffyFeatures()Bio::EnsEMBL::Slice
get_all_AssemblyExceptionFeatures()Bio::EnsEMBL::Slice
get_all_Attributes()Bio::EnsEMBL::Slice
get_all_compara_DnaAlignFeatures()Bio::EnsEMBL::Slice
get_all_compara_Syntenies()Bio::EnsEMBL::Slice
get_all_CopyNumberVariantProbeFeatures()Bio::EnsEMBL::Slice
get_all_CopyNumberVariantProbes()Bio::EnsEMBL::Slice
get_all_DAS_Features()Bio::EnsEMBL::Slice
get_all_DASFactories()Bio::EnsEMBL::Slice
get_all_DASFeatures()Bio::EnsEMBL::Slice
get_all_DASFeatures_dsn()Bio::EnsEMBL::Slice
get_all_DitagFeatures()Bio::EnsEMBL::Slice
get_all_DnaAlignFeatures()Bio::EnsEMBL::Slice
get_all_Exons()Bio::EnsEMBL::Slice
get_all_ExternalFeatures()Bio::EnsEMBL::Slice
get_all_Genes()Bio::EnsEMBL::Slice
get_all_Genes_by_source()Bio::EnsEMBL::Slice
get_all_Genes_by_type()Bio::EnsEMBL::Slice
get_all_genotyped_SNPs()Bio::EnsEMBL::Slice
get_all_genotyped_VariationFeatures()Bio::EnsEMBL::Slice
get_all_Haplotypes()Bio::EnsEMBL::Slice
get_all_IndividualSlice()Bio::EnsEMBL::Slice
get_all_KaryotypeBands()Bio::EnsEMBL::Slice
get_all_LD_values()Bio::EnsEMBL::Slice
get_all_MapFrags()Bio::EnsEMBL::Slice
get_all_MarkerFeatures()Bio::EnsEMBL::Slice
get_all_MiscFeatures()Bio::EnsEMBL::Slice
get_all_OligoFeatures()Bio::EnsEMBL::Slice
get_all_OligoFeatures_by_type()Bio::EnsEMBL::Slice
get_all_PredictionTranscripts()Bio::EnsEMBL::Slice
get_all_ProteinAlignFeatures()Bio::EnsEMBL::Slice
get_all_QtlFeatures()Bio::EnsEMBL::Slice
get_all_RepeatFeatures()Bio::EnsEMBL::Slice
get_all_SearchFeatures()Bio::EnsEMBL::Slice
get_all_SimilarityFeatures()Bio::EnsEMBL::Slice
get_all_SimpleFeatures()Bio::EnsEMBL::Slice
get_all_SNPs()Bio::EnsEMBL::Slice
get_all_SNPs_transcripts()Bio::EnsEMBL::Slice
get_all_somatic_VariationFeatures()Bio::EnsEMBL::Slice
get_all_somatic_VariationFeatures_with_annotation()Bio::EnsEMBL::Slice
get_all_StructuralVariationFeatures()Bio::EnsEMBL::Slice
get_all_StructuralVariationFeatures_by_VariationSet()Bio::EnsEMBL::Slice
get_all_StructuralVariations()Bio::EnsEMBL::Slice
get_all_supercontig_Slices()Bio::EnsEMBL::Slice
get_all_synonyms()Bio::EnsEMBL::Slice
get_all_Transcripts()Bio::EnsEMBL::Slice
get_all_VariationFeatures()Bio::EnsEMBL::Slice
get_all_VariationFeatures_by_Population()Bio::EnsEMBL::Slice
get_all_VariationFeatures_by_VariationSet()Bio::EnsEMBL::Slice
get_all_VariationFeatures_with_annotation()Bio::EnsEMBL::Slice
get_base_count()Bio::EnsEMBL::Slice
get_by_Individual()Bio::EnsEMBL::Slice
get_by_strain()Bio::EnsEMBL::Slice
get_Chromosome()Bio::EnsEMBL::Slice
get_generic_features()Bio::EnsEMBL::Slice
get_MarkerFeatures_by_Name()Bio::EnsEMBL::Slice
get_repeatmasked_seq()Bio::EnsEMBL::Slice
get_seq_region_id()Bio::EnsEMBL::Slice
get_tiling_path()Bio::EnsEMBL::Slice
has_MapSet()Bio::EnsEMBL::Slice
id()Bio::EnsEMBL::Slice
invert()Bio::EnsEMBL::Slice
is_circular()Bio::EnsEMBL::Slice
is_reference()Bio::EnsEMBL::Slice
is_toplevel()Bio::EnsEMBL::Slice
length()Bio::EnsEMBL::Slice
moltype()Bio::EnsEMBL::Slice
name()Bio::EnsEMBL::Slice
new()Bio::EnsEMBL::RepeatMaskedSlice
new_fast()Bio::EnsEMBL::Slice
not_default_masking_cases()Bio::EnsEMBL::RepeatMaskedSlice
old_get_all_DASFeatures()Bio::EnsEMBL::Slice
primary_id()Bio::EnsEMBL::Slice
project()Bio::EnsEMBL::Slice
project_to_slice()Bio::EnsEMBL::Slice
repeat_mask_logic_names()Bio::EnsEMBL::RepeatMaskedSlice
seq()Bio::EnsEMBL::RepeatMaskedSlice
seq_region_length()Bio::EnsEMBL::Slice
seq_region_name()Bio::EnsEMBL::Slice
seq_region_Slice()Bio::EnsEMBL::Slice
soft_mask()Bio::EnsEMBL::RepeatMaskedSlice
start()Bio::EnsEMBL::Slice
strand()Bio::EnsEMBL::Slice
sub_Slice()Bio::EnsEMBL::Slice
subseq()Bio::EnsEMBL::RepeatMaskedSlice
summary_as_hash()Bio::EnsEMBL::Slice