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Bio::EnsEMBL::UnconventionalTranscriptAssociation Class Reference

List of all members.


Class Summary

Synopsis

  $ex = new Bio::EnsEMBL::UnconventionalTranscriptAssociation( $gene,
    $transcript, $type );

Definition at line 12 of file UnconventionalTranscriptAssociation.pm.

Available Methods

public Bio::EnsEMBL::Gene gene ()
public String interaction_type ()
public
Bio::EnsEMBL::UnconventionalTranscriptAssociation 
new ()
public Bio::EnsEMBL::Transcript transcript ()

Method Documentation

public Bio::EnsEMBL::Gene Bio::EnsEMBL::UnconventionalTranscriptAssociation::gene ( )
  Args       : none
  Example    : $gene = $uta->gene()
  Description: Getter/setter for the gene part of this association.
  Returntype : Bio::EnsEMBL::Gene
  Exceptions : none
  Caller     : general
  Status     : At risk
 
Code:
click to view
public String Bio::EnsEMBL::UnconventionalTranscriptAssociation::interaction_type ( )
  Args       : none
  Example    : $type = $uta->interaction_type()
  Description: Getter/setter for the interaction_type of this association.
  Returntype : String
  Exceptions : none
  Caller     : General
  Status     : At risk
 
Code:
click to view
public Bio::EnsEMBL::UnconventionalTranscriptAssociation Bio::EnsEMBL::UnconventionalTranscriptAssociation::new ( )
  Args [1]   : Bio::EnsEMBL::Gene - the gene which is associated.
  Args [2]   : Bio::EnsEMBL::Transcript - the transcript which is associated.
  Args [3]   : String type - the type of assocation, e.g. "antisense",
               "sense_intronic","sense_overlaping_exonic","chimeric_sense_exonic".
  Example    : $uta = new Bio::EnsEMBL::UnconventionalTranscriptAssociation($gene, $transcript, "antisense")
  Description: create an UnconventionalTranscriptAssociation object.
  Returntype : Bio::EnsEMBL::UnconventionalTranscriptAssociation.
  Exceptions : Wrong argument types
  Caller     : general
  Status     : At risk
 
Code:
click to view
public Bio::EnsEMBL::Transcript Bio::EnsEMBL::UnconventionalTranscriptAssociation::transcript ( )
  Args       : none
  Example    : $transcript = $uta->transcript()
  Description: Getter/setter for the transcript part of this association.
  Returntype : Bio::EnsEMBL::Transcript
  Exceptions : none
  Caller     : General
  Status     : At risk
 
Code:
click to view

The documentation for this class was generated from the following file: