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A list of all files with their relative paths.
Bio/EnsEMBL/
AlignStrainSlice.pm
[code]
Bio/EnsEMBL/
Analysis.pm
[code]
Bio/EnsEMBL/
ApiVersion.pm
[code]
Bio/EnsEMBL/
ArchiveStableId.pm
[code]
Bio/EnsEMBL/
AssemblyExceptionFeature.pm
[code]
Bio/EnsEMBL/
AssemblyMapper.pm
[code]
Bio/EnsEMBL/
Attribute.pm
[code]
Bio/EnsEMBL/
BaseAlignFeature.pm
[code]
Bio/EnsEMBL/
ChainedAssemblyMapper.pm
[code]
Bio/EnsEMBL/
CircularSlice.pm
[code]
Bio/EnsEMBL/
CoordSystem.pm
[code]
Bio/EnsEMBL/
DataFile.pm
[code]
Bio/EnsEMBL/
DBEntry.pm
[code]
Bio/EnsEMBL/
DBLoader.pm
[code]
Bio/EnsEMBL/
DensityFeature.pm
[code]
Bio/EnsEMBL/
DensityFeatureSet.pm
[code]
Bio/EnsEMBL/
DensityType.pm
[code]
Bio/EnsEMBL/
DnaDnaAlignFeature.pm
[code]
Bio/EnsEMBL/
DnaPepAlignFeature.pm
[code]
Bio/EnsEMBL/
Exon.pm
[code]
Bio/EnsEMBL/
Feature.pm
[code]
Bio/EnsEMBL/
FeaturePair.pm
[code]
Bio/EnsEMBL/
Gene.pm
[code]
Bio/EnsEMBL/
IdentityXref.pm
[code]
Bio/EnsEMBL/
IndividualSlice.pm
[code]
Bio/EnsEMBL/
IndividualSliceFactory.pm
[code]
Bio/EnsEMBL/
Intron.pm
[code]
Bio/EnsEMBL/
KaryotypeBand.pm
[code]
Bio/EnsEMBL/
LRGSlice.pm
[code]
Bio/EnsEMBL/
MappedSlice.pm
[code]
Bio/EnsEMBL/
MappedSliceContainer.pm
[code]
Bio/EnsEMBL/
Mapper.pm
[code]
Bio/EnsEMBL/
MiscFeature.pm
[code]
Bio/EnsEMBL/
MiscSet.pm
[code]
Bio/EnsEMBL/
OntologyTerm.pm
[code]
Bio/EnsEMBL/
OntologyXref.pm
[code]
Bio/EnsEMBL/
Operon.pm
[code]
Bio/EnsEMBL/
OperonTranscript.pm
[code]
Bio/EnsEMBL/
PaddedSlice.pm
[code]
Bio/EnsEMBL/
PepDnaAlignFeature.pm
[code]
Bio/EnsEMBL/
PredictionExon.pm
[code]
Bio/EnsEMBL/
PredictionTranscript.pm
[code]
Bio/EnsEMBL/
ProjectionSegment.pm
[code]
Bio/EnsEMBL/
ProteinFeature.pm
[code]
Bio/EnsEMBL/
Registry.pm
[code]
Bio/EnsEMBL/
RepeatConsensus.pm
[code]
Bio/EnsEMBL/
RepeatFeature.pm
[code]
Bio/EnsEMBL/
RepeatMaskedSlice.pm
[code]
Bio/EnsEMBL/
Root.pm
[code]
Bio/EnsEMBL/
SeqEdit.pm
[code]
Bio/EnsEMBL/
SeqFeature.pm
[code]
Bio/EnsEMBL/
SeqFeatureI.pm
[code]
Bio/EnsEMBL/
SeqRegionSynonym.pm
[code]
Bio/EnsEMBL/
SimpleFeature.pm
[code]
Bio/EnsEMBL/
Slice.pm
[code]
Bio/EnsEMBL/
SNP.pm
[code]
Bio/EnsEMBL/
SplicingEvent.pm
[code]
Bio/EnsEMBL/
SplicingEventFeature.pm
[code]
Bio/EnsEMBL/
SplicingTranscriptPair.pm
[code]
Bio/EnsEMBL/
StableIdEvent.pm
[code]
Bio/EnsEMBL/
StableIdHistoryTree.pm
[code]
Bio/EnsEMBL/
Storable.pm
[code]
Bio/EnsEMBL/
StrainSlice.pm
[code]
Bio/EnsEMBL/
TopLevelAssemblyMapper.pm
[code]
Bio/EnsEMBL/
Transcript.pm
[code]
Bio/EnsEMBL/
TranscriptFactory.pm
[code]
Bio/EnsEMBL/
TranscriptMapper.pm
[code]
Bio/EnsEMBL/
Translation.pm
[code]
Bio/EnsEMBL/
UnconventionalTranscriptAssociation.pm
[code]
Bio/EnsEMBL/
UnmappedObject.pm
[code]
Bio/EnsEMBL/
Upstream.pm
[code]
Bio/EnsEMBL/Analysis/
PairAlign.pm
[code]
Bio/EnsEMBL/Analysis/
Programs.pm
[code]
Bio/EnsEMBL/DB/
ExternalFeatureFactoryI.pm
[code]
Bio/EnsEMBL/DBFile/
CollectionAdaptor.pm
[code]
Bio/EnsEMBL/DBFile/
FileAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
AnalysisAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
ArchiveStableIdAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
AssemblyExceptionFeatureAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
AssemblyMapperAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
AssemblySliceAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
AttributeAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
BaseAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
BaseAlignFeatureAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
BaseFeatureAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
BaseMetaContainer.pm
[code]
Bio/EnsEMBL/DBSQL/
CompressedSequenceAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
CoordSystemAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
DataFileAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
DBAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
DBConnection.pm
[code]
Bio/EnsEMBL/DBSQL/
DBEntryAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
DensityFeatureAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
DensityTypeAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
DnaAlignFeatureAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
ExonAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
GeneAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
GOTermAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
KaryotypeBandAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
MergedAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
MetaContainer.pm
[code]
Bio/EnsEMBL/DBSQL/
MetaCoordContainer.pm
[code]
Bio/EnsEMBL/DBSQL/
MiscFeatureAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
MiscSetAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
OntologyDBAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
OntologyTermAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
OperonAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
OperonTranscriptAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
PredictionExonAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
PredictionTranscriptAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
ProteinAlignFeatureAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
ProteinFeatureAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
ProxyDBConnection.pm
[code]
Bio/EnsEMBL/DBSQL/
ProxySNPAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
RepeatConsensusAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
RepeatFeatureAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
SeqRegionSynonymAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
SequenceAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
SimpleFeatureAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
SliceAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
SOTermAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
SplicingEventAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
SplicingEventFeatureAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
SplicingTranscriptPairAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
StatementHandle.pm
[code]
Bio/EnsEMBL/DBSQL/
StrainSliceAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
SupportingFeatureAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
TranscriptAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
TranscriptSupportingFeatureAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
TranslationAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
UnconventionalTranscriptAssociationAdaptor.pm
[code]
Bio/EnsEMBL/DBSQL/
UnmappedObjectAdaptor.pm
[code]
Bio/EnsEMBL/DensityPlot/
BinValue.pm
[code]
Bio/EnsEMBL/DensityPlot/
BinValueSet.pm
[code]
Bio/EnsEMBL/External/
BlastAdaptor.pm
[code]
Bio/EnsEMBL/External/
ExternalFeatureAdaptor.pm
[code]
Bio/EnsEMBL/IdMapping/
Archiver.pm
[code]
Bio/EnsEMBL/IdMapping/
BaseObject.pm
[code]
Bio/EnsEMBL/IdMapping/
Cache.pm
[code]
Bio/EnsEMBL/IdMapping/
Entry.pm
[code]
Bio/EnsEMBL/IdMapping/
ExonScoreBuilder.pm
[code]
Bio/EnsEMBL/IdMapping/
GeneScoreBuilder.pm
[code]
Bio/EnsEMBL/IdMapping/
InternalIdMapper.pm
[code]
Bio/EnsEMBL/IdMapping/
MappingList.pm
[code]
Bio/EnsEMBL/IdMapping/
ResultAnalyser.pm
[code]
Bio/EnsEMBL/IdMapping/
ScoreBuilder.pm
[code]
Bio/EnsEMBL/IdMapping/
ScoredMappingMatrix.pm
[code]
Bio/EnsEMBL/IdMapping/
Serialisable.pm
[code]
Bio/EnsEMBL/IdMapping/
StableIdMapper.pm
[code]
Bio/EnsEMBL/IdMapping/
SyntenyFramework.pm
[code]
Bio/EnsEMBL/IdMapping/
SyntenyRegion.pm
[code]
Bio/EnsEMBL/IdMapping/
TinyExon.pm
[code]
Bio/EnsEMBL/IdMapping/
TinyFeature.pm
[code]
Bio/EnsEMBL/IdMapping/
TinyGene.pm
[code]
Bio/EnsEMBL/IdMapping/
TinyTranscript.pm
[code]
Bio/EnsEMBL/IdMapping/
TinyTranslation.pm
[code]
Bio/EnsEMBL/IdMapping/
TranscriptScoreBuilder.pm
[code]
Bio/EnsEMBL/IdMapping/InternalIdMapper/
BaseMapper.pm
[code]
Bio/EnsEMBL/IdMapping/InternalIdMapper/
EnsemblExonGeneric.pm
[code]
Bio/EnsEMBL/IdMapping/InternalIdMapper/
EnsemblGeneGeneric.pm
[code]
Bio/EnsEMBL/IdMapping/InternalIdMapper/
EnsemblTranscriptGeneric.pm
[code]
Bio/EnsEMBL/IdMapping/StableIdGenerator/
AedesAegypti.pm
[code]
Bio/EnsEMBL/IdMapping/StableIdGenerator/
AnophelesGambiae.pm
[code]
Bio/EnsEMBL/IdMapping/StableIdGenerator/
EnsemblGeneric.pm
[code]
Bio/EnsEMBL/IdMapping/StableIdGenerator/
PristionchusPacificus.pm
[code]
Bio/EnsEMBL/Map/
Ditag.pm
[code]
Bio/EnsEMBL/Map/
DitagFeature.pm
[code]
Bio/EnsEMBL/Map/
MapLocation.pm
[code]
Bio/EnsEMBL/Map/
Marker.pm
[code]
Bio/EnsEMBL/Map/
MarkerFeature.pm
[code]
Bio/EnsEMBL/Map/
MarkerSynonym.pm
[code]
Bio/EnsEMBL/Map/
Qtl.pm
[code]
Bio/EnsEMBL/Map/
QtlFeature.pm
[code]
Bio/EnsEMBL/Map/DBSQL/
DitagAdaptor.pm
[code]
Bio/EnsEMBL/Map/DBSQL/
DitagFeatureAdaptor.pm
[code]
Bio/EnsEMBL/Map/DBSQL/
MarkerAdaptor.pm
[code]
Bio/EnsEMBL/Map/DBSQL/
MarkerFeatureAdaptor.pm
[code]
Bio/EnsEMBL/Map/DBSQL/
QtlAdaptor.pm
[code]
Bio/EnsEMBL/Map/DBSQL/
QtlFeatureAdaptor.pm
[code]
Bio/EnsEMBL/Mapper/
Coordinate.pm
[code]
Bio/EnsEMBL/Mapper/
Gap.pm
[code]
Bio/EnsEMBL/Mapper/
IndelCoordinate.pm
[code]
Bio/EnsEMBL/Mapper/
IndelPair.pm
[code]
Bio/EnsEMBL/Mapper/
Pair.pm
[code]
Bio/EnsEMBL/Mapper/
RangeRegistry.pm
[code]
Bio/EnsEMBL/Mapper/
Unit.pm
[code]
Bio/EnsEMBL/Utils/
Argument.pm
[code]
Bio/EnsEMBL/Utils/
AssemblyProjector.pm
[code]
Bio/EnsEMBL/Utils/
BiotypeMapper.pm
[code]
Bio/EnsEMBL/Utils/
BitString.pm
[code]
Bio/EnsEMBL/Utils/
Cache.pm
[code]
Bio/EnsEMBL/Utils/
CigarString.pm
[code]
Bio/EnsEMBL/Utils/
CliHelper.pm
[code]
Bio/EnsEMBL/Utils/
Collector.pm
[code]
Bio/EnsEMBL/Utils/
ConfigRegistry.pm
[code]
Bio/EnsEMBL/Utils/
ConfParser.pm
[code]
Bio/EnsEMBL/Utils/
ConversionSupport.pm
[code]
Bio/EnsEMBL/Utils/
Converter.pm
[code]
Bio/EnsEMBL/Utils/
EasyArgv.pm
[code]
Bio/EnsEMBL/Utils/
Eprof.pm
[code]
Bio/EnsEMBL/Utils/
EprofStack.pm
[code]
Bio/EnsEMBL/Utils/
Exception.pm
[code]
Bio/EnsEMBL/Utils/
IO.pm
[code]
Bio/EnsEMBL/Utils/
Iterator.pm
[code]
Bio/EnsEMBL/Utils/
Logger.pm
[code]
Bio/EnsEMBL/Utils/
PolyA.pm
[code]
Bio/EnsEMBL/Utils/
Proxy.pm
[code]
Bio/EnsEMBL/Utils/
Scalar.pm
[code]
Bio/EnsEMBL/Utils/
SchemaConversion.pm
[code]
Bio/EnsEMBL/Utils/
ScriptUtils.pm
[code]
Bio/EnsEMBL/Utils/
SeqDumper.pm
[code]
Bio/EnsEMBL/Utils/
SeqRegionCache.pm
[code]
Bio/EnsEMBL/Utils/
Sequence.pm
[code]
Bio/EnsEMBL/Utils/
Slice.pm
[code]
Bio/EnsEMBL/Utils/
SqlHelper.pm
[code]
Bio/EnsEMBL/Utils/
TranscriptAlleles.pm
[code]
Bio/EnsEMBL/Utils/
TranscriptSNPs.pm
[code]
Bio/EnsEMBL/Utils/
URI.pm
[code]
Bio/EnsEMBL/Utils/Converter/
bio_ens.pm
[code]
Bio/EnsEMBL/Utils/Converter/
bio_ens_analysis.pm
[code]
Bio/EnsEMBL/Utils/Converter/
bio_ens_exon.pm
[code]
Bio/EnsEMBL/Utils/Converter/
bio_ens_featurePair.pm
[code]
Bio/EnsEMBL/Utils/Converter/
bio_ens_gene.pm
[code]
Bio/EnsEMBL/Utils/Converter/
bio_ens_hit.pm
[code]
Bio/EnsEMBL/Utils/Converter/
bio_ens_hsp.pm
[code]
Bio/EnsEMBL/Utils/Converter/
bio_ens_predictionExon.pm
[code]
Bio/EnsEMBL/Utils/Converter/
bio_ens_predictionGene.pm
[code]
Bio/EnsEMBL/Utils/Converter/
bio_ens_seqFeature.pm
[code]
Bio/EnsEMBL/Utils/Converter/
bio_ens_transcript.pm
[code]
Bio/EnsEMBL/Utils/Converter/
ens_bio.pm
[code]
Bio/EnsEMBL/Utils/Converter/
ens_bio_featurePair.pm
[code]
Bio/EnsEMBL/Utils/Converter/
ens_bio_seqFeature.pm
[code]
Bio/EnsEMBL/Utils/IO/
FASTASerializer.pm
[code]
Bio/EnsEMBL/Utils/IO/
FeatureSerializer.pm
[code]
Bio/EnsEMBL/Utils/IO/
GFFSerializer.pm
[code]
Bio/EnsEMBL/Utils/IO/
ReportSerializer.pm
[code]
Bio/EnsEMBL/Utils/IO/
Serializer.pm
[code]
Bio/EnsEMBL/Utils/VegaCuration/
Gene.pm
[code]
Bio/EnsEMBL/Utils/VegaCuration/
Transcript.pm
[code]
Bio/EnsEMBL/Utils/VegaCuration/
Translation.pm
[code]
t/
TestUtils.pm
[code]
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