File List

A list of all files with their relative paths.

Bio/EnsEMBL/AlignStrainSlice.pm [code]
Bio/EnsEMBL/Analysis.pm [code]
Bio/EnsEMBL/ApiVersion.pm [code]
Bio/EnsEMBL/ArchiveStableId.pm [code]
Bio/EnsEMBL/AssemblyExceptionFeature.pm [code]
Bio/EnsEMBL/AssemblyMapper.pm [code]
Bio/EnsEMBL/Attribute.pm [code]
Bio/EnsEMBL/BaseAlignFeature.pm [code]
Bio/EnsEMBL/ChainedAssemblyMapper.pm [code]
Bio/EnsEMBL/CircularSlice.pm [code]
Bio/EnsEMBL/CoordSystem.pm [code]
Bio/EnsEMBL/DataFile.pm [code]
Bio/EnsEMBL/DBEntry.pm [code]
Bio/EnsEMBL/DBLoader.pm [code]
Bio/EnsEMBL/DensityFeature.pm [code]
Bio/EnsEMBL/DensityFeatureSet.pm [code]
Bio/EnsEMBL/DensityType.pm [code]
Bio/EnsEMBL/DnaDnaAlignFeature.pm [code]
Bio/EnsEMBL/DnaPepAlignFeature.pm [code]
Bio/EnsEMBL/Exon.pm [code]
Bio/EnsEMBL/Feature.pm [code]
Bio/EnsEMBL/FeaturePair.pm [code]
Bio/EnsEMBL/Gene.pm [code]
Bio/EnsEMBL/IdentityXref.pm [code]
Bio/EnsEMBL/IndividualSlice.pm [code]
Bio/EnsEMBL/IndividualSliceFactory.pm [code]
Bio/EnsEMBL/Intron.pm [code]
Bio/EnsEMBL/KaryotypeBand.pm [code]
Bio/EnsEMBL/LRGSlice.pm [code]
Bio/EnsEMBL/MappedSlice.pm [code]
Bio/EnsEMBL/MappedSliceContainer.pm [code]
Bio/EnsEMBL/Mapper.pm [code]
Bio/EnsEMBL/MiscFeature.pm [code]
Bio/EnsEMBL/MiscSet.pm [code]
Bio/EnsEMBL/OntologyTerm.pm [code]
Bio/EnsEMBL/OntologyXref.pm [code]
Bio/EnsEMBL/Operon.pm [code]
Bio/EnsEMBL/OperonTranscript.pm [code]
Bio/EnsEMBL/PaddedSlice.pm [code]
Bio/EnsEMBL/PepDnaAlignFeature.pm [code]
Bio/EnsEMBL/PredictionExon.pm [code]
Bio/EnsEMBL/PredictionTranscript.pm [code]
Bio/EnsEMBL/ProjectionSegment.pm [code]
Bio/EnsEMBL/ProteinFeature.pm [code]
Bio/EnsEMBL/Registry.pm [code]
Bio/EnsEMBL/RepeatConsensus.pm [code]
Bio/EnsEMBL/RepeatFeature.pm [code]
Bio/EnsEMBL/RepeatMaskedSlice.pm [code]
Bio/EnsEMBL/Root.pm [code]
Bio/EnsEMBL/SeqEdit.pm [code]
Bio/EnsEMBL/SeqFeature.pm [code]
Bio/EnsEMBL/SeqFeatureI.pm [code]
Bio/EnsEMBL/SeqRegionSynonym.pm [code]
Bio/EnsEMBL/SimpleFeature.pm [code]
Bio/EnsEMBL/Slice.pm [code]
Bio/EnsEMBL/SNP.pm [code]
Bio/EnsEMBL/SplicingEvent.pm [code]
Bio/EnsEMBL/SplicingEventFeature.pm [code]
Bio/EnsEMBL/SplicingTranscriptPair.pm [code]
Bio/EnsEMBL/StableIdEvent.pm [code]
Bio/EnsEMBL/StableIdHistoryTree.pm [code]
Bio/EnsEMBL/Storable.pm [code]
Bio/EnsEMBL/StrainSlice.pm [code]
Bio/EnsEMBL/TopLevelAssemblyMapper.pm [code]
Bio/EnsEMBL/Transcript.pm [code]
Bio/EnsEMBL/TranscriptFactory.pm [code]
Bio/EnsEMBL/TranscriptMapper.pm [code]
Bio/EnsEMBL/Translation.pm [code]
Bio/EnsEMBL/UnconventionalTranscriptAssociation.pm [code]
Bio/EnsEMBL/UnmappedObject.pm [code]
Bio/EnsEMBL/Upstream.pm [code]
Bio/EnsEMBL/Analysis/PairAlign.pm [code]
Bio/EnsEMBL/Analysis/Programs.pm [code]
Bio/EnsEMBL/DB/ExternalFeatureFactoryI.pm [code]
Bio/EnsEMBL/DBFile/CollectionAdaptor.pm [code]
Bio/EnsEMBL/DBFile/FileAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/ArchiveStableIdAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/AssemblyExceptionFeatureAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/AssemblyMapperAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/AssemblySliceAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/AttributeAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/BaseAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/BaseAlignFeatureAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/BaseMetaContainer.pm [code]
Bio/EnsEMBL/DBSQL/CompressedSequenceAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/CoordSystemAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/DataFileAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/DBAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/DBConnection.pm [code]
Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/DensityFeatureAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/DensityTypeAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/DnaAlignFeatureAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/ExonAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/GeneAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/GOTermAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/KaryotypeBandAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/MergedAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/MetaContainer.pm [code]
Bio/EnsEMBL/DBSQL/MetaCoordContainer.pm [code]
Bio/EnsEMBL/DBSQL/MiscFeatureAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/MiscSetAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/OntologyDBAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/OntologyTermAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/OperonAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/OperonTranscriptAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/PredictionExonAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/PredictionTranscriptAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/ProteinAlignFeatureAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/ProteinFeatureAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/ProxyDBConnection.pm [code]
Bio/EnsEMBL/DBSQL/ProxySNPAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/RepeatConsensusAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/RepeatFeatureAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/SeqRegionSynonymAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/SequenceAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/SimpleFeatureAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/SliceAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/SOTermAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/SplicingEventAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/SplicingEventFeatureAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/SplicingTranscriptPairAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/StatementHandle.pm [code]
Bio/EnsEMBL/DBSQL/StrainSliceAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/SupportingFeatureAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/TranscriptSupportingFeatureAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/TranslationAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/UnconventionalTranscriptAssociationAdaptor.pm [code]
Bio/EnsEMBL/DBSQL/UnmappedObjectAdaptor.pm [code]
Bio/EnsEMBL/DensityPlot/BinValue.pm [code]
Bio/EnsEMBL/DensityPlot/BinValueSet.pm [code]
Bio/EnsEMBL/External/BlastAdaptor.pm [code]
Bio/EnsEMBL/External/ExternalFeatureAdaptor.pm [code]
Bio/EnsEMBL/IdMapping/Archiver.pm [code]
Bio/EnsEMBL/IdMapping/BaseObject.pm [code]
Bio/EnsEMBL/IdMapping/Cache.pm [code]
Bio/EnsEMBL/IdMapping/Entry.pm [code]
Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm [code]
Bio/EnsEMBL/IdMapping/GeneScoreBuilder.pm [code]
Bio/EnsEMBL/IdMapping/InternalIdMapper.pm [code]
Bio/EnsEMBL/IdMapping/MappingList.pm [code]
Bio/EnsEMBL/IdMapping/ResultAnalyser.pm [code]
Bio/EnsEMBL/IdMapping/ScoreBuilder.pm [code]
Bio/EnsEMBL/IdMapping/ScoredMappingMatrix.pm [code]
Bio/EnsEMBL/IdMapping/Serialisable.pm [code]
Bio/EnsEMBL/IdMapping/StableIdMapper.pm [code]
Bio/EnsEMBL/IdMapping/SyntenyFramework.pm [code]
Bio/EnsEMBL/IdMapping/SyntenyRegion.pm [code]
Bio/EnsEMBL/IdMapping/TinyExon.pm [code]
Bio/EnsEMBL/IdMapping/TinyFeature.pm [code]
Bio/EnsEMBL/IdMapping/TinyGene.pm [code]
Bio/EnsEMBL/IdMapping/TinyTranscript.pm [code]
Bio/EnsEMBL/IdMapping/TinyTranslation.pm [code]
Bio/EnsEMBL/IdMapping/TranscriptScoreBuilder.pm [code]
Bio/EnsEMBL/IdMapping/InternalIdMapper/BaseMapper.pm [code]
Bio/EnsEMBL/IdMapping/InternalIdMapper/EnsemblExonGeneric.pm [code]
Bio/EnsEMBL/IdMapping/InternalIdMapper/EnsemblGeneGeneric.pm [code]
Bio/EnsEMBL/IdMapping/InternalIdMapper/EnsemblTranscriptGeneric.pm [code]
Bio/EnsEMBL/IdMapping/StableIdGenerator/AedesAegypti.pm [code]
Bio/EnsEMBL/IdMapping/StableIdGenerator/AnophelesGambiae.pm [code]
Bio/EnsEMBL/IdMapping/StableIdGenerator/EnsemblGeneric.pm [code]
Bio/EnsEMBL/IdMapping/StableIdGenerator/PristionchusPacificus.pm [code]
Bio/EnsEMBL/Map/Ditag.pm [code]
Bio/EnsEMBL/Map/DitagFeature.pm [code]
Bio/EnsEMBL/Map/MapLocation.pm [code]
Bio/EnsEMBL/Map/Marker.pm [code]
Bio/EnsEMBL/Map/MarkerFeature.pm [code]
Bio/EnsEMBL/Map/MarkerSynonym.pm [code]
Bio/EnsEMBL/Map/Qtl.pm [code]
Bio/EnsEMBL/Map/QtlFeature.pm [code]
Bio/EnsEMBL/Map/DBSQL/DitagAdaptor.pm [code]
Bio/EnsEMBL/Map/DBSQL/DitagFeatureAdaptor.pm [code]
Bio/EnsEMBL/Map/DBSQL/MarkerAdaptor.pm [code]
Bio/EnsEMBL/Map/DBSQL/MarkerFeatureAdaptor.pm [code]
Bio/EnsEMBL/Map/DBSQL/QtlAdaptor.pm [code]
Bio/EnsEMBL/Map/DBSQL/QtlFeatureAdaptor.pm [code]
Bio/EnsEMBL/Mapper/Coordinate.pm [code]
Bio/EnsEMBL/Mapper/Gap.pm [code]
Bio/EnsEMBL/Mapper/IndelCoordinate.pm [code]
Bio/EnsEMBL/Mapper/IndelPair.pm [code]
Bio/EnsEMBL/Mapper/Pair.pm [code]
Bio/EnsEMBL/Mapper/RangeRegistry.pm [code]
Bio/EnsEMBL/Mapper/Unit.pm [code]
Bio/EnsEMBL/Utils/Argument.pm [code]
Bio/EnsEMBL/Utils/AssemblyProjector.pm [code]
Bio/EnsEMBL/Utils/BiotypeMapper.pm [code]
Bio/EnsEMBL/Utils/BitString.pm [code]
Bio/EnsEMBL/Utils/Cache.pm [code]
Bio/EnsEMBL/Utils/CigarString.pm [code]
Bio/EnsEMBL/Utils/CliHelper.pm [code]
Bio/EnsEMBL/Utils/Collector.pm [code]
Bio/EnsEMBL/Utils/ConfigRegistry.pm [code]
Bio/EnsEMBL/Utils/ConfParser.pm [code]
Bio/EnsEMBL/Utils/ConversionSupport.pm [code]
Bio/EnsEMBL/Utils/Converter.pm [code]
Bio/EnsEMBL/Utils/EasyArgv.pm [code]
Bio/EnsEMBL/Utils/Eprof.pm [code]
Bio/EnsEMBL/Utils/EprofStack.pm [code]
Bio/EnsEMBL/Utils/Exception.pm [code]
Bio/EnsEMBL/Utils/IO.pm [code]
Bio/EnsEMBL/Utils/Iterator.pm [code]
Bio/EnsEMBL/Utils/Logger.pm [code]
Bio/EnsEMBL/Utils/PolyA.pm [code]
Bio/EnsEMBL/Utils/Proxy.pm [code]
Bio/EnsEMBL/Utils/Scalar.pm [code]
Bio/EnsEMBL/Utils/SchemaConversion.pm [code]
Bio/EnsEMBL/Utils/ScriptUtils.pm [code]
Bio/EnsEMBL/Utils/SeqDumper.pm [code]
Bio/EnsEMBL/Utils/SeqRegionCache.pm [code]
Bio/EnsEMBL/Utils/Sequence.pm [code]
Bio/EnsEMBL/Utils/Slice.pm [code]
Bio/EnsEMBL/Utils/SqlHelper.pm [code]
Bio/EnsEMBL/Utils/TranscriptAlleles.pm [code]
Bio/EnsEMBL/Utils/TranscriptSNPs.pm [code]
Bio/EnsEMBL/Utils/URI.pm [code]
Bio/EnsEMBL/Utils/Converter/bio_ens.pm [code]
Bio/EnsEMBL/Utils/Converter/bio_ens_analysis.pm [code]
Bio/EnsEMBL/Utils/Converter/bio_ens_exon.pm [code]
Bio/EnsEMBL/Utils/Converter/bio_ens_featurePair.pm [code]
Bio/EnsEMBL/Utils/Converter/bio_ens_gene.pm [code]
Bio/EnsEMBL/Utils/Converter/bio_ens_hit.pm [code]
Bio/EnsEMBL/Utils/Converter/bio_ens_hsp.pm [code]
Bio/EnsEMBL/Utils/Converter/bio_ens_predictionExon.pm [code]
Bio/EnsEMBL/Utils/Converter/bio_ens_predictionGene.pm [code]
Bio/EnsEMBL/Utils/Converter/bio_ens_seqFeature.pm [code]
Bio/EnsEMBL/Utils/Converter/bio_ens_transcript.pm [code]
Bio/EnsEMBL/Utils/Converter/ens_bio.pm [code]
Bio/EnsEMBL/Utils/Converter/ens_bio_featurePair.pm [code]
Bio/EnsEMBL/Utils/Converter/ens_bio_seqFeature.pm [code]
Bio/EnsEMBL/Utils/IO/FASTASerializer.pm [code]
Bio/EnsEMBL/Utils/IO/FeatureSerializer.pm [code]
Bio/EnsEMBL/Utils/IO/GFFSerializer.pm [code]
Bio/EnsEMBL/Utils/IO/ReportSerializer.pm [code]
Bio/EnsEMBL/Utils/IO/Serializer.pm [code]
Bio/EnsEMBL/Utils/VegaCuration/Gene.pm [code]
Bio/EnsEMBL/Utils/VegaCuration/Transcript.pm [code]
Bio/EnsEMBL/Utils/VegaCuration/Translation.pm [code]
t/TestUtils.pm [code]