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Bio::EnsEMBL::Hive::DBSQL::DBAdaptor Class Reference
Inheritance diagram for Bio::EnsEMBL::Hive::DBSQL::DBAdaptor:

List of all members.


Class Summary

Synopsis

    $db = Bio::EnsEMBL::Hive::DBSQL::DBAdaptor-\>new(
        -user   =\> 'root',
        -dbname =\> 'pog',
        -host   =\> 'caldy',
        -driver =\> 'mysql',
        );

Description

  This object represents the handle for a Hive system enabled database
 

Definition at line 21 of file DBAdaptor.pm.

Available Methods

protected
Bio::EnsEMBL::ExternalFeatureFactory 
_each_DASFeatureFactory ()
protected _get_schema_build ()
public void add_DASFeatureFactory ()
public void add_db_adaptor ()
public void add_ExternalFeatureAdaptor ()
public void add_ExternalFeatureFactory ()
public void add_GenericFeatureAdaptor ()
public Array all_species ()
public assembly_type ()
public AUTOLOAD ()
public db ()
public db_handle ()
public
Bio::EnsEMBL::DBSQL::DBConnection 
dbc ()
public dbname ()
public DESTROY ()
public disconnect_when_inactive ()
public Dna dnadb ()
public driver ()
public Adaptor get_adaptor ()
public Hash get_all_db_adaptors ()
public get_available_adaptors ()
public
Bio::EnsEMBL::DBSQL::DBConnection 
get_db_adaptor ()
public Reference get_ExternalFeatureAdaptors ()
public Reference get_GenericFeatureAdaptors ()
public
Bio::EnsEMBL::Utils::SeqRegionCache 
get_SeqRegionCache ()
public String group ()
public hive_use_triggers ()
public host ()
public Boolean is_multispecies ()
public list_supported_assemblies ()
public
Bio::EnsEMBL::DBSQL::DBAdaptor 
new ()
public Int no_cache ()
public password ()
public port ()
public prepare ()
public reconnect_when_lost ()
public remove_all_DASFeatureFactories ()
public void remove_db_adaptor ()
public void set_adaptor ()
public source ()
public String species ()
public String species_id ()
public username ()

Method Documentation

public Bio::EnsEMBL::Hive::DBSQL::DBAdaptor::get_available_adaptors ( )

Undocumented method

Code:
click to view

Reimplemented from Bio::EnsEMBL::DBSQL::DBAdaptor.

public Bio::EnsEMBL::Hive::DBSQL::DBAdaptor::hive_use_triggers ( )

Undocumented method

Code:
click to view

The documentation for this class was generated from the following file: