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Full Class List
Exhaustive list of all classes in the code
Bio::EnsEMBL::Pipeline::Alignment
Bio::EnsEMBL::Pipeline::Alignment::AlignmentSeq
AlignmentSquizz
Bio::EnsEMBL::Pipeline::Alignment::AlignmentStats
Bio::EnsEMBL::Pipeline::Analysis
Bio::EnsEMBL::Pipeline::DBSQL::AnalysisAdaptor
Bio::EnsEMBL::Pipeline::AnaSubmission
Bio::EnsEMBL::Pipeline::BatchSubmission
Bio::EnsEMBL::Pipeline::SeqFetcher::BioIndex
Bio::EnsEMBL::Pipeline::SeqFetcher::BPIndex
Bio::EnsEMBL::Pipeline::GeneDuplication::CodonBasedAlignment
Bio::EnsEMBL::Pipeline::DBSQL::CompressedDnaAlignFeatureAdaptor
Bio::EnsEMBL::Pipeline::DBSQL::DBAdaptor
Bio::EnsEMBL::Pipeline::DBSQL::Finished::DBAdaptor
Bio::EnsEMBL::Pipeline::SeqFetcher::DBIndex
Bio::EnsEMBL::Pipeline::DBSQL::Finished::DnaAlignFeatureAdaptor
Bio::EnsEMBL::Pipeline::BatchSubmission::Dummy
Bio::EnsEMBL::Pipeline::SeqFetcher::Efetch
Bio::EnsEMBL::Pipeline::Tools::Embl
EnsTestDB
Bio::EnsEMBL::Pipeline::Alignment::EvidenceAlignment
Bio::EnsEMBL::Pipeline::SeqFetcher::FetchFromBlastDB
Bio::EnsEMBL::Pipeline::SeqFetcher::FileIndex
Bio::EnsEMBL::Pipeline::GeneDuplication::Finder
Bio::EnsEMBL::Pipeline::SeqFetcher::Finished_Dfetch
Bio::EnsEMBL::Pipeline::SeqFetcher::Finished_Pfetch
Bio::EnsEMBL::Pipeline::SeqFetcher::Finished_xdget
Bio::EnsEMBL::Pipeline::Flag
Bio::EnsEMBL::Pipeline::DBSQL::FlagAdaptor
Bio::EnsEMBL::Pipeline::SeqFetcher::Getseqs
Bio::EnsEMBL::Pipeline::SeqFetcher::Getz
Bio::EnsEMBL::Pipeline::BatchSubmission::GridEngine
Bio::EnsEMBL::Pipeline::Finished::HitDescription
Bio::EnsEMBL::Pipeline::DBSQL::Finished::HitDescriptionAdaptor
Bio::EnsEMBL::Pipeline::Alignment::InformativeSites
Bio::EnsEMBL::Pipeline::Utils::InputIDFactory
Bio::EnsEMBL::Pipeline::Finished::Job
Bio::EnsEMBL::Pipeline::Job
Bio::EnsEMBL::Pipeline::DBSQL::Finished::JobAdaptor
Bio::EnsEMBL::Pipeline::DBSQL::JobAdaptor
Bio::EnsEMBL::Pipeline::BatchSubmission::Local
Bio::EnsEMBL::Pipeline::BatchSubmission::LSF
Bio::EnsEMBL::Pipeline::SeqFetcher::Mfetch
Bio::EnsEMBL::Pipeline::Tools::MM_Taxonomy
Bio::EnsEMBL::Pipeline::Monitor
Bio::EnsEMBL::Pipeline::SeqFetcher::OBDAIndexSeqFetcher
Bio::EnsEMBL::Pipeline::GeneDuplication::PAML
Bio::EnsEMBL::Pipeline::SeqFetcher::Pfetch
Bio::EnsEMBL::Pipeline::Utils::PipelineSanityChecks
Bio::EnsEMBL::Pipeline::Finished::PipeQueue
Bio::EnsEMBL::Pipeline::DBSQL::Finished::ProteinAlignFeatureAdaptor
Bio::EnsEMBL::Pipeline::GeneDuplication::Result
Bio::EnsEMBL::Pipeline::Rule
Bio::EnsEMBL::Pipeline::DBSQL::RuleAdaptor
Bio::EnsEMBL::Pipeline::Finished::RuleManager
Bio::EnsEMBL::Pipeline::RuleManager
Bio::EnsEMBL::Pipeline::SeqFetcher
Bio::EnsEMBL::Pipeline::BatchSubmission::SGE_GridEngine_v6
Bio::EnsEMBL::Pipeline::Utils::SliceDump
Bio::EnsEMBL::Pipeline::DBSQL::Finished::StateInfoContainer
Bio::EnsEMBL::Pipeline::DBSQL::StateInfoContainer
Bio::EnsEMBL::Pipeline::Status
Bio::EnsEMBL::Pipeline::SeqFetcher::xdget