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File List
A list of all files with their relative paths.
Variation/Allele.pm [code]
Variation/AlleleFeature.pm [code]
Variation/BaseStructuralVariation.pm [code]
Variation/BaseVariationFeature.pm [code]
Variation/BaseVariationFeatureOverlap.pm [code]
Variation/BaseVariationFeatureOverlapAllele.pm [code]
Variation/ConsequenceType.pm [code]
Variation/ExternalFeatureVariation.pm [code]
Variation/ExternalFeatureVariationAllele.pm [code]
Variation/Failable.pm [code]
Variation/Genotype.pm [code]
Variation/GenotypeCode.pm [code]
Variation/Individual.pm [code]
Variation/IndividualGenotype.pm [code]
Variation/IndividualGenotypeFeature.pm [code]
Variation/IntergenicVariation.pm [code]
Variation/IntergenicVariationAllele.pm [code]
Variation/LDFeatureContainer.pm [code]
Variation/MotifFeatureVariation.pm [code]
Variation/MotifFeatureVariationAllele.pm [code]
Variation/OverlapConsequence.pm [code]
Variation/Population.pm [code]
Variation/PopulationGenotype.pm [code]
Variation/ProteinFunctionPredictionMatrix.pm [code]
Variation/ReadCoverage.pm [code]
Variation/ReadCoverageCollection.pm [code]
Variation/RegulationVariation.pm [code]
Variation/RegulatoryFeatureVariation.pm [code]
Variation/RegulatoryFeatureVariationAllele.pm [code]
Variation/Sample.pm [code]
Variation/StructuralVariation.pm [code]
Variation/StructuralVariationAnnotation.pm [code]
Variation/StructuralVariationFeature.pm [code]
Variation/StructuralVariationOverlap.pm [code]
Variation/StructuralVariationOverlapAllele.pm [code]
Variation/Study.pm [code]
Variation/SupportingStructuralVariation.pm [code]
Variation/TranscriptVariation.pm [code]
Variation/TranscriptVariationAllele.pm [code]
Variation/Variation.pm [code]
Variation/VariationAnnotation.pm [code]
Variation/VariationFeature.pm [code]
Variation/VariationFeatureOverlap.pm [code]
Variation/VariationFeatureOverlapAllele.pm [code]
Variation/VariationSet.pm [code]
Variation/DBSQL/AlleleAdaptor.pm [code]
Variation/DBSQL/AlleleFeatureAdaptor.pm [code]
Variation/DBSQL/AttributeAdaptor.pm [code]
Variation/DBSQL/BaseAdaptor.pm [code]
Variation/DBSQL/BaseGenotypeAdaptor.pm [code]
Variation/DBSQL/BaseStructuralVariationAdaptor.pm [code]
Variation/DBSQL/DBAdaptor.pm [code]
Variation/DBSQL/GenotypeCodeAdaptor.pm [code]
Variation/DBSQL/IndividualAdaptor.pm [code]
Variation/DBSQL/IndividualGenotypeAdaptor.pm [code]
Variation/DBSQL/IndividualGenotypeFeatureAdaptor.pm [code]
Variation/DBSQL/LDFeatureContainerAdaptor.pm [code]
Variation/DBSQL/MetaContainer.pm [code]
Variation/DBSQL/PopulationAdaptor.pm [code]
Variation/DBSQL/PopulationGenotypeAdaptor.pm [code]
Variation/DBSQL/ProteinFunctionPredictionMatrixAdaptor.pm [code]
Variation/DBSQL/ReadCoverageAdaptor.pm [code]
Variation/DBSQL/ReadCoverageCollectionAdaptor.pm [code]
Variation/DBSQL/SampleAdaptor.pm [code]
Variation/DBSQL/StructuralVariationAdaptor.pm [code]
Variation/DBSQL/StructuralVariationAnnotationAdaptor.pm [code]
Variation/DBSQL/StructuralVariationFeatureAdaptor.pm [code]
Variation/DBSQL/StudyAdaptor.pm [code]
Variation/DBSQL/SupportingStructuralVariationAdaptor.pm [code]
Variation/DBSQL/TranscriptVariationAdaptor.pm [code]
Variation/DBSQL/VariationAdaptor.pm [code]
Variation/DBSQL/VariationAnnotationAdaptor.pm [code]
Variation/DBSQL/VariationFeatureAdaptor.pm [code]
Variation/DBSQL/VariationFeatureOverlapAdaptor.pm [code]
Variation/DBSQL/VariationSetAdaptor.pm [code]
Variation/Pipeline/BaseVariationProcess.pm [code]
Variation/Pipeline/FinishVariationClass.pm [code]
Variation/Pipeline/InitTranscriptEffect.pm [code]
Variation/Pipeline/InitVariationClass.pm [code]
Variation/Pipeline/RebuildIndexes.pm [code]
Variation/Pipeline/SetVariationClass.pm [code]
Variation/Pipeline/TranscriptEffect.pm [code]
Variation/Pipeline/TranscriptFileAdaptor.pm [code]
Variation/Pipeline/UpdateVariationFeature.pm [code]
Variation/Pipeline/VariationConsequence_conf.pm [code]
Variation/Pipeline/ProteinFunction/BaseProteinFunction.pm [code]
Variation/Pipeline/ProteinFunction/Constants.pm [code]
Variation/Pipeline/ProteinFunction/InitJobs.pm [code]
Variation/Pipeline/ProteinFunction/ProteinFunction_conf.pm [code]
Variation/Pipeline/ProteinFunction/RunPolyPhen.pm [code]
Variation/Pipeline/ProteinFunction/RunSift.pm [code]
Variation/Pipeline/ProteinFunction/RunWeka.pm [code]
Variation/Utils/BaseVepFilterPlugin.pm [code]
Variation/Utils/BaseVepPlugin.pm [code]
Variation/Utils/ComparaUtils.pm [code]
Variation/Utils/Condel.pm [code]
Variation/Utils/CondelConstants.pm [code]
Variation/Utils/Config.pm [code]
Variation/Utils/Constants.pm [code]
Variation/Utils/dbSNP.pm [code]
Variation/Utils/EnsEMBL2GFF3.pm [code]
Variation/Utils/Sequence.pm [code]
Variation/Utils/VariationEffect.pm [code]
Variation/Utils/VEP.pm [code]