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Medaka vs Stickleback BlastZ alignments

Medaka (Oryzias latipes, MEDAKA1) and Stickleback(Gasterosteus aculeatus, BROADS1) were aligned using the BlastZ alignment algorithm (Schwartz S et al., Genome Res.;13(1):103-7, Kent WJ et al., Proc Natl Acad Sci U S A., 2003;100(20):11484-9) in Ensembl release 41. Medaka was used as the reference species. After running BlastZ, the raw BlastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.

Full list of pairwise alignments

Configuration parameters

No configuration parameters are available


Number of alignment blocks: 401533

Genome coverage(bp) Coding exon coverage (bp)
158,565,879 out of 868,983,502 28,116,717 out of 30,193,605
131,566,787 out of 461,533,448 28,818,176 out of 32,649,418