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Mouse vs Dog BlastZ alignments

Mouse (Mus musculus, NCBIM37) and Dog(Canis familiaris, BROADD2) were aligned using the BlastZ alignment algorithm (Schwartz S et al., Genome Res.;13(1):103-7, Kent WJ et al., Proc Natl Acad Sci U S A., 2003;100(20):11484-9) in Ensembl release 47. Mouse was used as the reference species. After running BlastZ, the raw BlastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.

Full list of pairwise alignments

Configuration parameters

No configuration parameters are available


Number of alignment blocks: 1366372

Genome coverage(bp) Coding exon coverage (bp)
797,967,084 out of 2,716,965,481 30,818,513 out of 35,152,623
851,517,271 out of 2,531,673,953 30,381,400 out of 31,088,517