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Mouse vs Platypus BlastZ alignments

Mouse (Mus musculus, NCBIM37) and Platypus(Ornithorhynchus anatinus, OANA5) were aligned using the BlastZ alignment algorithm (Schwartz S et al., Genome Res.;13(1):103-7, Kent WJ et al., Proc Natl Acad Sci U S A., 2003;100(20):11484-9) in Ensembl release 47. Mouse was used as the reference species. After running BlastZ, the raw BlastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.

Full list of pairwise alignments

Configuration parameters

No configuration parameters are available


Number of alignment blocks: 308878

Genome coverage(bp) Coding exon coverage (bp)
104,310,708 out of 2,716,965,481 24,195,784 out of 35,152,623
91,886,825 out of 2,073,148,626 17,211,052 out of 22,999,611