Archive Ensembl HomeArchive Ensembl Home

Human vs Platypus BlastZ alignments

Human (Homo sapiens, GRCh37) and Platypus(Ornithorhynchus anatinus, OANA5) were aligned using the BlastZ alignment algorithm (Schwartz S et al., Genome Res.;13(1):103-7, Kent WJ et al., Proc Natl Acad Sci U S A., 2003;100(20):11484-9) in Ensembl release 55. Human was used as the reference species. After running BlastZ, the raw BlastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.

Full list of pairwise alignments

Configuration parameters

No configuration parameters are available

Results

Number of alignment blocks: 432625

Genome coverage(bp) Coding exon coverage (bp)
Human
166,051,328 out of 3,098,825,702 25,602,558 out of 35,483,623
Platypus
146,854,051 out of 2,073,148,626 17,976,653 out of 22,999,611