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Human vs Guinea Pig BlastZ alignments

Human (Homo sapiens, GRCh37) and Guinea Pig(Cavia porcellus, cavPor3) were aligned using the BlastZ alignment algorithm (Schwartz S et al., Genome Res.;13(1):103-7, Kent WJ et al., Proc Natl Acad Sci U S A., 2003;100(20):11484-9) in Ensembl release 55. Human was used as the reference species. After running BlastZ, the raw BlastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.

Full list of pairwise alignments

Configuration parameters

No configuration parameters are available

Results

Number of alignment blocks: 1861036

Genome coverage(bp) Coding exon coverage (bp)
Human
1,327,332,113 out of 3,098,825,702 33,891,558 out of 35,483,623
Guinea Pig
1,213,568,915 out of 2,723,219,641 27,749,977 out of 29,810,634