Archive Ensembl HomeArchive Ensembl Home

Human vs Horse BlastZ alignments

Human (Homo sapiens, GRCh37) and Horse(Equus caballus, EquCab2) were aligned using the BlastZ alignment algorithm (Schwartz S et al., Genome Res.;13(1):103-7, Kent WJ et al., Proc Natl Acad Sci U S A., 2003;100(20):11484-9) in Ensembl release 55. Human was used as the reference species. After running BlastZ, the raw BlastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.

Full list of pairwise alignments

Configuration parameters

No configuration parameters are available


Number of alignment blocks: 1658371

Genome coverage(bp) Coding exon coverage (bp)
1,646,951,905 out of 3,098,825,702 33,585,263 out of 35,483,623
1,565,123,430 out of 2,474,912,402 28,667,562 out of 31,514,871