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Human vs Alpaca BlastZ alignments

Human (Homo sapiens, GRCh37) and Alpaca(Vicugna pacos, vicPac1) were aligned using the BlastZ alignment algorithm (Schwartz S et al., Genome Res.;13(1):103-7, Kent WJ et al., Proc Natl Acad Sci U S A., 2003;100(20):11484-9) in Ensembl release 55. Human was used as the reference species. After running BlastZ, the raw BlastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.

Full list of pairwise alignments

Configuration parameters

No configuration parameters are available

Results

Number of alignment blocks: 1651937

Genome coverage(bp) Coding exon coverage (bp)
Human
1,184,484,083 out of 3,098,825,702 25,761,095 out of 35,483,623
Alpaca
1,097,561,463 out of 2,967,729,481 16,181,812 out of 18,994,395