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Human vs Pika BlastZ alignments

Human (Homo sapiens, GRCh37) and Pika(Ochotona princeps, pika) were aligned using the BlastZ alignment algorithm (Schwartz S et al., Genome Res.;13(1):103-7, Kent WJ et al., Proc Natl Acad Sci U S A., 2003;100(20):11484-9) in Ensembl release 55. Human was used as the reference species. After running BlastZ, the raw BlastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.

Full list of pairwise alignments

Configuration parameters

No configuration parameters are available

Results

Number of alignment blocks: 1430719

Genome coverage(bp) Coding exon coverage (bp)
Human
859,962,787 out of 3,098,825,702 30,529,965 out of 35,483,623
Pika
778,425,106 out of 4,294,967,295 20,134,012 out of 26,499,928