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Human vs Mouse BlastZ alignments

Human (Homo sapiens, GRCh37) and Mouse(Mus musculus, NCBIM37) were aligned using the BlastZ alignment algorithm (Schwartz S et al., Genome Res.;13(1):103-7, Kent WJ et al., Proc Natl Acad Sci U S A., 2003;100(20):11484-9) in Ensembl release 55. Human was used as the reference species. After running BlastZ, the raw BlastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.

Full list of pairwise alignments

Configuration parameters

No configuration parameters are available


Number of alignment blocks: 1511698

Genome coverage(bp) Coding exon coverage (bp)
994,514,285 out of 3,098,825,702 34,127,431 out of 35,483,623
905,172,784 out of 2,716,965,481 31,633,775 out of 35,152,623