Archive Ensembl HomeArchive Ensembl Home

Statistics on protein trees

Protein trees

The protein tree pipeline is described at the following page.

  • Gene coverage: Number of genes and members in total, included in trees (either species-specific, or encompassing other species), and orphaned (not in any tree)
  • Tree size: Sizes of trees (genes, and distinct species), grouped according to the root ancestral species
  • Predicted gene events: For each ancestral species, number of speciation and duplication nodes (inc. dubious ones), with the average duplication score

Top↑

Number of genes and members in total, included in trees (either species-specific, or encompassing other species), and orphaned (not in any tree)

taxon_idtaxon_namenb_pepnb_canon_pepnb_pep_spectreenb_pep_anctreenb_pep_orphanperc_pep_spectreeperc_pep_anctreeperc_pep_orphan
7757Petromyzon marinus114291040217498993291.6795.163.16
7897Latimeria chalumnae2359919567429189971412.1997.090.72
28377Anolis carolinensis1893917792135173832740.7697.701.54
9103Meleagris gallopavo16483141122139621480.0198.941.05
9031Gallus gallus22194167361241499416180.7489.599.67
59729Taeniopygia guttata1820417488231169193381.3296.751.93
9258Ornithorhynchus anatinus2683617951394168826752.1994.043.76
9361Dasypus novemcinctus148461480332146071640.2298.681.11
9358Choloepus hoffmanni12435123930122891040.0099.160.84
37347Tupaia belangeri154621545848152211890.3198.471.22
10020Dipodomys ordii15853157982156611350.0199.130.85
10090Mus musculus5676623075259219728441.1295.223.66
10116Rattus norvegicus329712293849222646250.2197.062.72
43179Ictidomys tridecemlineatus2000018826018785410.0099.780.22
10141Cavia porcellus19774186737185111550.0499.130.83
9978Ochotona princeps15993159939157961880.0698.771.18
9986Oryctolagus cuniculus2381219018618918940.0399.470.49
9478Tarsius syrichta136621361517134701280.1298.930.94
9544Macaca mulatta363842190597214453630.4497.901.66
9601Pongo abelii235332006850195514670.2597.422.33
9598Pan troglodytes19894187464186191230.0299.320.66
9606Homo sapiens93072204797201992730.0398.631.33
9593Gorilla gorilla274732096243204774420.2197.692.11
61853Nomascus leucogenys23186181610180611000.0099.450.55
9483Callithrix jacchus43792209938207692160.0498.931.03
30611Otolemur garnettii1998619506019438680.0099.650.35
30608Microcebus murinus163191631910161531560.0698.980.96
132908Pteropus vampyrus1705316990216891970.0199.420.57
59463Myotis lucifugus20719197288195791410.0499.240.71
9685Felis catus15048150482148731730.0198.841.15
9646Ailuropoda melanoleuca21136193430191911520.0099.210.79
9615Canis familiaris255591930510191461490.0599.180.77
9796Equus caballus2264120436723195132003.5495.480.98
42254Sorex araneus131921318714130071660.1198.641.26
9365Erinaceus europaeus14592145888144261540.0598.891.06
30538Vicugna pacos11793117521011666760.0999.270.65
9823Sus scrofa231182164035212513540.1698.201.64
9913Bos taurus22118199943119870930.1699.380.47
9739Tursiops truncatus1659816537216452830.0199.490.50
9785Loxodonta africana25635200332319917930.1199.420.46
9813Procavia capensis16101160442158861560.0199.020.97
9371Echinops telfairi165621656293161613080.5697.581.86
13616Monodelphis domestica325411946674190972950.3898.101.52
9305Sarcophilus harrisii2240418788119182054640.6396.902.47
9315Macropus eugenii1534215290415205810.0399.440.53
8364Xenopus tropicalis227051842946917874862.5496.990.47
99883Tetraodon nigroviridis231181960254192383100.2898.141.58
31033Takifugu rubripes4784118523418440790.0299.550.43
69293Gasterosteus aculeatus2757620787111199976790.5396.203.27
8090Oryzias latipes2466119686373185297841.8994.123.98
8128Oreochromis niloticus2676321437110212011260.5198.900.59
8049Gadus morhua2210020095108196623250.5497.851.62
7955Danio rerio4215926206816248735173.1194.911.97
7719Ciona intestinalis17302166714571187543392.7471.2326.03
51511Ciona savignyi2014311604220996314211.9085.8612.25
7227Drosophila melanogaster238491391719839182275214.2565.9819.77
6239Caenorhabditis elegans312342051768628721493433.4542.5124.05
4932Saccharomyces cerevisiae6692669211432864268517.0842.8040.12
Total1371192103067416007983997306701.5595.472.98

Top↑

Sizes of trees (genes, and distinct species), grouped according to the root ancestral species

taxon_idtaxon_namenb_treestot_nb_pepavg_nb_pepmax_nb_pepavg_nb_specmax_nb_specavg_nb_pep_per_spec
33154Opisthokonta2330244603104.9840051.41582.00
33213Bilateria2370298866126.1040049.04572.48
33316Coelomata10629614490.5340045.03561.95
7711Chordata12319114674.0439837.58551.84
7742Vertebrata7846878387.7339936.36532.14
7757Petromyzon marinus491743.55141.0013.55
117571Euteleostomi15688170752.1139629.17521.86
8287Sarcopterygii284998535.1639520.56451.87
7897Latimeria chalumnae484298.94371.0018.94
32523Tetrapoda1521190378.3139523.74443.29
32524Amniota4541582134.8539317.32431.70
32561Sauria16462.8842.6341.13
28377Anolis carolinensis221356.14241.0016.14
8825Neognathae32812473.802972.0931.58
9005Phasianidae15926.13312.0023.07
9103Meleagris gallopavo122.0021.0012.00
9031Gallus gallus321243.88151.0013.88
59729Taeniopygia guttata432315.37171.0015.37
40674Mammalia2951625355.0939917.61392.25
9258Ornithorhynchus anatinus533947.43271.0017.43
32525Theria3991510637.8639818.31381.74
9347Eutheria12011743614.523239.21351.32
9348Xenarthra5102.0022.0021.00
9361Dasypus novemcinctus7324.57141.0014.57
314146Euarchontoglires1278576.753213.66181.36
37347Tupaia belangeri13483.69111.0013.69
314147Glires9283.1172.0021.56
9989Rodentia372.3332.3331.00
33553Sciurognathi15503.33142.4731.29
10020Dipodomys ordii122.0021.0012.00
39107Murinae1597784.89652.0022.45
10090Mus musculus442595.89221.0015.89
10116Rattus norvegicus13493.77161.0013.77
10141Cavia porcellus372.3331.0012.33
9978Ochotona princeps393.0041.0013.00
9986Oryctolagus cuniculus263.0041.0013.00
9443Primates956536.872154.14101.39
376913Haplorrhini18764.2294.0071.07
9478Tarsius syrichta6172.8351.0012.83
314293Simiiformes19213406.981623.6971.55
9526Catarrhini1355604.15292.8061.46
9544Macaca mulatta35972.77101.0012.77
314295Hominoidea2127093.34203.1051.07
9604Hominidae1825032.76212.4241.11
9601Pongo abelii19502.63121.0012.63
207598Homininae1473692.5192.2631.11
9598Pan troglodytes242.0021.0012.00
9606Homo sapiens372.3331.0012.33
9593Gorilla gorilla15432.8771.0012.87
9483Callithrix jacchus382.6741.0012.67
30608Microcebus murinus4102.5031.0012.50
314145Laurasiatheria461102.3972.2231.08
9397Chiroptera122.0022.0021.00
132908Pteropus vampyrus122.0021.0012.00
59463Myotis lucifugus284.0061.0014.00
9685Felis catus122.0021.0012.00
379584Caniformia41852.0742.0021.04
9615Canis familiaris11010.00101.00110.00
9796Equus caballus1377235.28271.0015.28
9362Insectivora2168.00142.0024.00
42254Sorex araneus5142.8041.0012.80
9365Erinaceus europaeus482.0021.0012.00
91561Cetartiodactyla11322.9182.0021.45
30538Vicugna pacos3103.3361.0013.33
9823Sus scrofa16352.1941.0012.19
9913Bos taurus7314.43111.0014.43
9739Tursiops truncatus122.0021.0012.00
311790Afrotheria482.0022.0021.00
9785Loxodonta africana5234.60141.0014.60
9813Procavia capensis122.0021.0012.00
9371Echinops telfairi22934.23171.0014.23
9263Marsupialia18975.39292.2232.43
13616Monodelphis domestica16744.63101.0014.63
9305Sarcophilus harrisii371193.22151.0013.22
9315Macropus eugenii242.0021.0012.00
8364Xenopus tropicalis474699.98311.0019.98
186625Clupeocephala33228778.672933.8372.01
123370Holacanthopterygii44012212.78232.3561.16
32485Percomorpha965745.981412.5952.04
31031Tetraodontidae6122.0022.0021.00
99883Tetraodon nigroviridis21542.5771.0012.57
31033Takifugu rubripes242.0021.0012.00
129949Smegmamorpha35822.3482.0021.17
69293Gasterosteus aculeatus261114.27151.0014.27
8090Oryzias latipes843734.44231.0014.44
8128Oreochromis niloticus211105.24221.0015.24
8049Gadus morhua211085.14151.0015.14
7955Danio rerio1188166.921731.0016.92
7718Ciona135238032.81532.0021.41
7719Ciona intestinalis1644572.79151.0012.79
51511Ciona savignyi812202.7261.0012.72
7227Drosophila melanogaster48519834.09361.0014.09
6239Caenorhabditis elegans126268625.44371.0015.44
4932Saccharomyces cerevisiae37611433.04201.0013.04
Total19562100000451.1240023.45582.36

Top↑

For each ancestral species, number of speciation and duplication nodes (inc. dubious ones), with the average duplication score

taxon_idtaxon_namenb_nodesnb_spec_nodesnb_dup_nodesnb_dubious_nodesnb_gene_splitsavg_dupscoreavg_dupscore_nondub
33154Opisthokonta25312347184000.900.90
33213Bilateria86055602266433900.570.57
33316Coelomata76206103128023700.480.48
7711Chordata94277510168123600.410.41
7742Vertebrata122167678380373500.490.49
7757Petromyzon marinus1814017630511.001.00
117571Euteleostomi25828174686605175500.430.43
8287Sarcopterygii1730814851875158200.230.23
7897Latimeria chalumnae27790261001691.001.00
32523Tetrapoda140591292361452200.270.27
32524Amniota19153165501211139200.220.22
32561Sauria11709115571302200.470.47
28377Anolis carolinensis21390183103081.001.00
8825Neognathae13032128331851400.610.61
9005Phasianidae1229912098201000.710.71
9103Meleagris gallopavo430019202381.001.00
9031Gallus gallus1025091901061.001.00
59729Taeniopygia guttata27930253702561.001.00
40674Mammalia15424131051164115500.280.28
9258Ornithorhynchus anatinus24520213503171.001.00
32525Theria19734172341409109100.310.31
9347Eutheria1102417893557392556700.180.18
9348Xenarthra6986693353000.690.69
9361Dasypus novemcinctus91509050101.001.00
9358Choloepus hoffmanni5970594031.001.00
314146Euarchontoglires4355938373605458100.230.23
37347Tupaia belangeri87008470231.001.00
314147Glires15232144538669300.350.35
9989Rodentia13852132357953800.470.47
33553Sciurognathi212002112174500.570.57
10020Dipodomys ordii49204780141.001.00
39107Murinae18684173951289000.830.83
10090Mus musculus278102773081.001.00
10116Rattus norvegicus28030268501181.001.00
43179Ictidomys tridecemlineatus13170102302941.001.00
10141Cavia porcellus1450013830671.001.00
9975Lagomorpha105381044296000.680.68
9978Ochotona princeps58705620251.001.00
9986Oryctolagus cuniculus1857017770801.001.00
9443Primates177161718716336600.320.32
376913Haplorrhini90799000493000.410.41
9478Tarsius syrichta5090503061.001.00
314293Simiiformes187281765889717300.440.44
9526Catarrhini189021777084728500.410.41
9544Macaca mulatta16130135102621.001.00
314295Hominoidea174581688325931600.400.40
9604Hominidae17646172892659200.490.49
9601Pongo abelii46004160441.001.00
207598Homininae3427833949329000.610.61
9598Pan troglodytes23302200131.001.00
9606Homo sapiens5700564061.001.00
9593Gorilla gorilla61205690431.001.00
61853Nomascus leucogenys19101350561.001.00
9483Callithrix jacchus1586014970891.001.00
376911Strepsirrhini101691014326000.730.73
30611Otolemur garnettii1283012350481.001.00
30608Microcebus murinus47204420301.001.00
314145Laurasiatheria7234469241508259500.240.24
9397Chiroptera948194747000.500.50
132908Pteropus vampyrus29402670271.001.00
59463Myotis lucifugus2738026560821.001.00
33554Carnivora1160911505515300.470.47
9685Felis catus22002000201.001.00
379584Caniformia1483314653180000.680.68
9646Ailuropoda melanoleuca56904850841.001.00
9615Canis familiaris1204094302611.001.00
9796Equus caballus22310212101101.001.00
9362Insectivora5048502127000.700.70
42254Sorex araneus91109000111.001.00
9365Erinaceus europaeus6010593081.001.00
91561Cetartiodactyla3636036155205000.530.53
30538Vicugna pacos25102370141.001.00
9823Sus scrofa31700260405661.001.00
9913Bos taurus1644015920521.001.00
9739Tursiops truncatus18501630221.001.00
311790Afrotheria2092420773151000.650.65
9785Loxodonta africana21640200601581.001.00
9813Procavia capensis34903360131.001.00
9371Echinops telfairi1197011790181.001.00
9263Marsupialia2897528070905000.660.66
13616Monodelphis domestica20950194601491.001.00
9305Sarcophilus harrisii13300119301371.001.00
9315Macropus eugenii5250517081.001.00
8364Xenopus tropicalis3284032360481.001.00
186625Clupeocephala2232717957418918100.630.63
123370Holacanthopterygii190371767483952400.550.55
32485Percomorpha4137135915572488400.450.45
31031Tetraodontidae1574215551191000.690.69
99883Tetraodon nigroviridis14720129401781.001.00
31033Takifugu rubripes101909790401.001.00
129949Smegmamorpha9915990114000.570.57
69293Gasterosteus aculeatus13810126301181.001.00
8090Oryzias latipes13660121701491.001.00
8128Oreochromis niloticus219202187051.001.00
8049Gadus morhua12100108701231.001.00
7955Danio rerio55290540101281.001.00
7718Ciona959681071489000.780.78
7719Ciona intestinalis17190143702821.001.00
51511Ciona savignyi1154093602181.001.00
7227Drosophila melanogaster385503855001.001.00
6239Caenorhabditis elegans8512084920201.001.00
4932Saccharomyces cerevisiae1281012660151.001.00
Total (ancestral species)890775798622421904996300.450.45
Total (extant species)90282084534057481.001.00
Total9810577986221267244996357480.820.82