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eHive production system - init_pipeline

eHive production system

init_pipeline manual


SYNOPSIS  [-help | [ [-analysis_topup | -job_topup] ]

DESCRIPTION is a generic script that is used to create+setup=initialize eHive pipelines from PipeConfig configuration modules.


get this help message:

initialize a generic eHive pipeline: Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf -password 

see what command line options are available when initializing long multiplication example pipeline (assuming your current directory is ensembl-hive/modules/Bio/EnsEMBL/Hive) : PipeConfig/LongMult_conf -help

initialize the long multiplicaton pipeline by supplying not only mandatory but also optional data: (assuming your current directory is ensembl-hive/modules/Bio/EnsEMBL/Hive/PipeConfig) : LongMult_conf -password -first_mult 375857335 -second_mult 1111333355556666


    -help           :   get automatically generated list of options that can be set/changed when initializing a particular pipeline

    -analysis_topup :   a special initialization mode when (1) pipeline_create_commands are switched off and (2) only newly defined analyses are added to the database
                        This mode is only useful in the process of putting together a new pipeline.

    -job_topup      :   another special initialization mode when only jobs are created - no other structural changes to the pipeline are acted upon.


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