Archive Ensembl HomeArchive Ensembl Home
About Ensembl Variation | Data Description | Predicted Data | Database Description | Perl API | Variant Effect Predictor

Ensembl Variation - Sources Documentation

List of Variation sources for each species - Ensembl 67

Bos taurus

Bos taurus

SourceVersionDescription
dbSNP 133 Variants (including SNPs and indels) imported from dbSNP [http://www.ncbi.nlm.nih.gov/projects/SNP/]

Canis familiaris

Canis familiaris

SourceVersionDescription
dbSNP 126 Variants (including SNPs and indels) imported from dbSNP
DGVa 10/2011 Database of Genomic Variants Archive

Danio rerio

Danio rerio

SourceVersionDescription
dbSNP 136 Variants (including SNPs and indels) imported from dbSNP New version

Drosophila melanogaster

Drosophila melanogaster

SourceVersionDescription
DPGP 1 Variation features from DPGP, with Ensembl identifiers

Equus caballus

Equus caballus

SourceVersionDescription
dbSNP 130 Variants (including SNPs and indels) imported from dbSNP

Felis catus

Felis catus

SourceVersionDescription
dbSNP 127 Variants (including SNPs and indels) imported from dbSNP [http://www.ncbi.nlm.nih.gov/projects/SNP/] and mapped to the CAT assembly

Gallus gallus

Gallus gallus

SourceVersionDescription
dbSNP 128 Variants (including SNPs and indels) imported from dbSNP

Homo sapiens

Homo sapiens

SourceVersionDescription
dbSNP 135 Variants (including SNPs and indels) imported from dbSNP
DGVa 03/2012 Database of Genomic Variants Archive New version
NHGRI_GWAS_catalog 20/03/2012 Variants associated with phenotype data from the NHGRI GWAS catalog New version
COSMIC 58 Somatic mutations found in human cancers from the COSMIC project New version
EGA 03/2012 Variants imported from the European Genome-phenome Archive with phenotype association New version
Uniprot 21/03/2012 Variants with protein annotation imported from Uniprot New version
HGMD-PUBLIC 2012.1 Variants from HGMD-PUBLIC dataset March 2012 New version
OMIM 26/03/2012 Variations linked to entries in the Online Mendelian Inheritance in Man (OMIM) database New version
Open Access GWAS Database - Johnson & O'Donnell 'An Open Access Database of Genome-wide Association Results' PMID:19161620
LSDB_LEPRE1 08/04/2011 LEPRE1 homepage - Osteogenesis Imperfecta Variant Database - Leiden Open Variation Database
LSDB_PPIB 17/02/2011 PPIB homepage - Osteogenesis Imperfecta Variant Database - Leiden Open Variation Database
LSDB_CRTAP 08/04/2011 CRTAP homepage - Osteogenesis Imperfecta Variant Database - Leiden Open Variation Database
LSDB_FKBP10 16/05/2011 FKBP10 homepage - Osteogenesis Imperfecta Variant Database - Leiden Open Variation Database

Chip SourceVersionDescription
Affy GeneChip 100K Array - Variants from the Affymetrix GeneChip Human Mapping 100K Array Set
Affy GeneChip 500K Array - Variants from the Affymetrix GeneChip Human Mapping 500K Array Set
Affy GenomeWideSNP_6.0 - Variants from the Affymetrix Genome-Wide Human SNP Array 6.0
Illumina_CytoSNP12v1 - Variants from the Illumina Cyto SNP-12 v1 whole genome SNP genotyping chip designed for cytogenetic analysis
Illumina_Human660W-quad - Variants from the Illumina Human 660W-Quad whole genome SNP genotyping chip designed for association studies
Illumina_Human1M-duoV3 - Variants from the Illumina Human 1M-DuoV3 whole genome SNP genotyping chip designed for association studies
Affy GenomeWideSNP_6.0 CNV - Copy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0

Macaca mulatta

Macaca mulatta

New species!
SourceVersionDescription
dbSNP 136 Variants (including SNPs and indels) imported from dbSNP New source
DGVa 10/2011 Database of Genomic Variants Archive New source

Monodelphis domestica

Monodelphis domestica

SourceVersionDescription
dbSNP 128 Variants (including SNPs and indels) imported from dbSNP [http://www.ncbi.nlm.nih.gov/projects/SNP/]

Mus musculus

Mus musculus

SourceVersionDescription
dbSNP 132 Variants (including SNPs and indels) imported from dbSNP [http://www.ncbi.nlm.nih.gov/projects/SNP/]
DGVa 10/2011 Database of Genomic Variants Archive

Ornithorhynchus anatinus

Ornithorhynchus anatinus

SourceVersionDescription
ENSEMBL - Variants called by the ENSEMBL pipeline
dbSNP - Variants (including SNPs and indels) imported from dbSNP

Pan troglodytes

Pan troglodytes

SourceVersionDescription
dbSNP 136 Variants (including SNPs and indels) imported from dbSNP New version

Pongo abelii

Pongo abelii

SourceVersionDescription
dbSNP 136 Variants (including SNPs and indels) imported from dbSNP New source

Rattus norvegicus

Rattus norvegicus

SourceVersionDescription
dbSNP 136 Variants (including SNPs and indels) imported from dbSNP New version

Saccharomyces cerevisiae

Saccharomyces cerevisiae

SourceVersionDescription
SGRP - Variation features from SGRP, with Ensembl identifiers

Sus scrofa

Sus scrofa

SourceVersionDescription
dbSNP 136 Variants (including SNPs and indels) imported from dbSNP New version
Illumina_PorcineSNP60 60 PorcineSNP60 BeadChip

Taeniopygia guttata

Taeniopygia guttata

SourceVersionDescription
dbSNP 131 Variants (including SNPs and indels) imported from dbSNP [http://www.ncbi.nlm.nih.gov/projects/SNP/] and mapped to the Taeniopygia_guttata-3.2.4 assembly

Tetraodon nigroviridis

Tetraodon nigroviridis

SourceVersionDescription
dbSNP 132 Variants (including SNPs and indels) imported from dbSNP [http://www.ncbi.nlm.nih.gov/projects/SNP/] and mapped to the TETRAODON 8.0 assembly
Legend
New version of the data source in this release for the species
New data source in this release for the species