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Variant Effect Predictor
Ensembl Variation - Sources Documentation
List of Variation sources for each species - Ensembl 67
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Bos taurus |
Source | Version | Description | ||
---|---|---|---|---|
dbSNP | 133 | Variants (including SNPs and indels) imported from dbSNP [http://www.ncbi.nlm.nih.gov/projects/SNP/] |
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Canis familiaris |
Source | Version | Description | ||
---|---|---|---|---|
dbSNP | 126 | Variants (including SNPs and indels) imported from dbSNP | ||
DGVa | 10/2011 | Database of Genomic Variants Archive |
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Danio rerio |
Source | Version | Description | ||
---|---|---|---|---|
dbSNP | 136 | Variants (including SNPs and indels) imported from dbSNP | New version |
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Drosophila melanogaster |
Source | Version | Description | ||
---|---|---|---|---|
DPGP | 1 | Variation features from DPGP, with Ensembl identifiers |
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Equus caballus |
Source | Version | Description | ||
---|---|---|---|---|
dbSNP | 130 | Variants (including SNPs and indels) imported from dbSNP |
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Felis catus |
Source | Version | Description | ||
---|---|---|---|---|
dbSNP | 127 | Variants (including SNPs and indels) imported from dbSNP [http://www.ncbi.nlm.nih.gov/projects/SNP/] and mapped to the CAT assembly |
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Gallus gallus |
Source | Version | Description | ||
---|---|---|---|---|
dbSNP | 128 | Variants (including SNPs and indels) imported from dbSNP |
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Homo sapiens |
Source | Version | Description | ||
---|---|---|---|---|
dbSNP | 135 | Variants (including SNPs and indels) imported from dbSNP | ||
DGVa | 03/2012 | Database of Genomic Variants Archive | New version | |
NHGRI_GWAS_catalog | 20/03/2012 | Variants associated with phenotype data from the NHGRI GWAS catalog | New version | |
COSMIC | 58 | Somatic mutations found in human cancers from the COSMIC project | New version | |
EGA | 03/2012 | Variants imported from the European Genome-phenome Archive with phenotype association | New version | |
Uniprot | 21/03/2012 | Variants with protein annotation imported from Uniprot | New version | |
HGMD-PUBLIC | 2012.1 | Variants from HGMD-PUBLIC dataset March 2012 | New version | |
OMIM | 26/03/2012 | Variations linked to entries in the Online Mendelian Inheritance in Man (OMIM) database | New version | |
Open Access GWAS Database | - | Johnson & O'Donnell 'An Open Access Database of Genome-wide Association Results' PMID:19161620 | ||
LSDB_LEPRE1 | 08/04/2011 | LEPRE1 homepage - Osteogenesis Imperfecta Variant Database - Leiden Open Variation Database | ||
LSDB_PPIB | 17/02/2011 | PPIB homepage - Osteogenesis Imperfecta Variant Database - Leiden Open Variation Database | ||
LSDB_CRTAP | 08/04/2011 | CRTAP homepage - Osteogenesis Imperfecta Variant Database - Leiden Open Variation Database | ||
LSDB_FKBP10 | 16/05/2011 | FKBP10 homepage - Osteogenesis Imperfecta Variant Database - Leiden Open Variation Database |
Chip Source | Version | Description | ||
---|---|---|---|---|
Affy GeneChip 100K Array | - | Variants from the Affymetrix GeneChip Human Mapping 100K Array Set | ||
Affy GeneChip 500K Array | - | Variants from the Affymetrix GeneChip Human Mapping 500K Array Set | ||
Affy GenomeWideSNP_6.0 | - | Variants from the Affymetrix Genome-Wide Human SNP Array 6.0 | ||
Illumina_CytoSNP12v1 | - | Variants from the Illumina Cyto SNP-12 v1 whole genome SNP genotyping chip designed for cytogenetic analysis | ||
Illumina_Human660W-quad | - | Variants from the Illumina Human 660W-Quad whole genome SNP genotyping chip designed for association studies | ||
Illumina_Human1M-duoV3 | - | Variants from the Illumina Human 1M-DuoV3 whole genome SNP genotyping chip designed for association studies | ||
Affy GenomeWideSNP_6.0 CNV | - | Copy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0 |
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Macaca mulatta | New species! |
Source | Version | Description | ||
---|---|---|---|---|
dbSNP | 136 | Variants (including SNPs and indels) imported from dbSNP | New source | |
DGVa | 10/2011 | Database of Genomic Variants Archive | New source |
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Monodelphis domestica |
Source | Version | Description | ||
---|---|---|---|---|
dbSNP | 128 | Variants (including SNPs and indels) imported from dbSNP [http://www.ncbi.nlm.nih.gov/projects/SNP/] |
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Mus musculus |
Source | Version | Description | ||
---|---|---|---|---|
dbSNP | 132 | Variants (including SNPs and indels) imported from dbSNP [http://www.ncbi.nlm.nih.gov/projects/SNP/] | ||
DGVa | 10/2011 | Database of Genomic Variants Archive |
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Ornithorhynchus anatinus |
Source | Version | Description | ||
---|---|---|---|---|
ENSEMBL | - | Variants called by the ENSEMBL pipeline | ||
dbSNP | - | Variants (including SNPs and indels) imported from dbSNP |
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Pan troglodytes |
Source | Version | Description | ||
---|---|---|---|---|
dbSNP | 136 | Variants (including SNPs and indels) imported from dbSNP | New version |
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Pongo abelii |
Source | Version | Description | ||
---|---|---|---|---|
dbSNP | 136 | Variants (including SNPs and indels) imported from dbSNP | New source |
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Rattus norvegicus |
Source | Version | Description | ||
---|---|---|---|---|
dbSNP | 136 | Variants (including SNPs and indels) imported from dbSNP | New version |
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Saccharomyces cerevisiae |
Source | Version | Description | ||
---|---|---|---|---|
SGRP | - | Variation features from SGRP, with Ensembl identifiers |
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Sus scrofa |
Source | Version | Description | ||
---|---|---|---|---|
dbSNP | 136 | Variants (including SNPs and indels) imported from dbSNP | New version | |
Illumina_PorcineSNP60 | 60 | PorcineSNP60 BeadChip |
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Taeniopygia guttata |
Source | Version | Description | ||
---|---|---|---|---|
dbSNP | 131 | Variants (including SNPs and indels) imported from dbSNP [http://www.ncbi.nlm.nih.gov/projects/SNP/] and mapped to the Taeniopygia_guttata-3.2.4 assembly |
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Tetraodon nigroviridis |
Source | Version | Description | ||
---|---|---|---|---|
dbSNP | 132 | Variants (including SNPs and indels) imported from dbSNP [http://www.ncbi.nlm.nih.gov/projects/SNP/] and mapped to the TETRAODON 8.0 assembly |
Legend
New version of the data source in this release for the species | |
New data source in this release for the species |