Help & Documentation

Technical Documentation

• Gene Annotation
  • Annotation of Ig/Tcr Segment Genes
  • Annotation of Non-Coding RNAs
  • Gene-building on the 2x genomes
  • Genome Annotation
  • Identifying Alternative Splicing Events
  • RNA-seq Gene Models
  • The Consensus CDS Project
• Microarray Probeset Mapping
• Variation
  • Data Description
  • Predicted Data
  • Database Description
  • Import VCF script
  • Variant Effect Predictor
  • Variation Sources
  • Variation Tables Description
• Comparative Genomics
  • Compara Analyses
  • Family and GeneTree stable ID
  • Gene Families
  • Gene Orthology/Paralogy prediction method
  • Statistics on ncRNA trees
  • Statistics on protein trees
  • ncRNA orthologies
• Regulation
  • Regulatory Build
  • Regulation Sources
  • Regulatory Segmentation
• eHive production system
• API Documentation
  • API Installation
  • API Installation - CVS
  • API Registry
  • Code versioning scheme
  • Compara API
  • Core databases and API
  • Funcgen Database and API
  • Variation API
• Doxygen Perl documentation
• DAS (Distributed Annotation System)
  • Setting up a DAS server
• Web code
• Known Bugs