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Bio::EnsEMBL::Compara::Graph::ConnectedComponents Class Reference

List of all members.


Class Summary

Definition at line 7 of file ConnectedComponents.pm.

Available Methods

public Undef add_connection ()
public clusterset ()
public DESTROY ()
public get_cluster_count ()
public get_component_count ()
public new ()

Method Documentation

public Undef Bio::EnsEMBL::Compara::Graph::ConnectedComponents::add_connection ( )
  Description: Takes a pair of unique scalars and uses the NestedSet objects
     to build a 3 layer tree in memory.  There is a single root for the entire build
     process, and each cluster is a child of this root.  The <scalars> are children of
     the clusters. 
  Arg [1]    : <scalar> node1 identifier (some unique number, name or object/data reference)
  Arg [2]    : <scalar> node2 identifier
  Example    : $ccEngine->add_connection(1234567, $member);
               $ccEngine->add_connection(1234567, "ENG00000076598");
  Returntype : undef
  Exceptions : none
  Caller     : general
 
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public Bio::EnsEMBL::Compara::Graph::ConnectedComponents::clusterset ( )

Undocumented method

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public Bio::EnsEMBL::Compara::Graph::ConnectedComponents::DESTROY ( )

Undocumented method

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public Bio::EnsEMBL::Compara::Graph::ConnectedComponents::get_cluster_count ( )

Undocumented method

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public Bio::EnsEMBL::Compara::Graph::ConnectedComponents::get_component_count ( )

Undocumented method

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public Bio::EnsEMBL::Compara::Graph::ConnectedComponents::new ( )

Undocumented method

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The documentation for this class was generated from the following file: