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Bio::EnsEMBL::Compara::PipeConfig::Example::LastzMasterReg_conf Class Reference
Inheritance diagram for Bio::EnsEMBL::Compara::PipeConfig::Example::LastzMasterReg_conf:

List of all members.


Class Summary

Definition at line 6 of file LastzMasterReg_conf.pm.

Available Methods

public beekeeper_extra_cmdline_options ()
public db_connect_command ()
public db_execute_command ()
public dbconn_2_mysql ()
public dbconn_2_url ()
public default_options ()
public fully_substituted_string ()
public fully_substituted_structure ()
public hash_leaves ()
public load_cmdline_options ()
public merge_from_rules ()
public new ()
public o ()
public pipeline_analyses ()
public pipeline_create_commands ()
public pipeline_url ()
public pipeline_wide_parameters ()
public pre_options ()
public process_options ()
public resource_classes ()
public root ()
public run ()
public substitute ()
public use_cases ()

Method Documentation

public Bio::EnsEMBL::Compara::PipeConfig::Example::LastzMasterReg_conf::default_options ( )

Undocumented method

Code:
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Reimplemented from Bio::EnsEMBL::Compara::PipeConfig::PairAligner_conf.

public Bio::EnsEMBL::Compara::PipeConfig::PairAligner_conf::pipeline_analyses ( ) [inherited]

Undocumented method

Code:
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Reimplemented from Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf.

public Bio::EnsEMBL::Compara::PipeConfig::PairAligner_conf::pipeline_create_commands ( ) [inherited]

Undocumented method

Code:
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Reimplemented from Bio::EnsEMBL::Compara::PipeConfig::ComparaGeneric_conf.

Reimplemented in Bio::EnsEMBL::Compara::PipeConfig::TBlat_conf.

public Bio::EnsEMBL::Compara::PipeConfig::PairAligner_conf::pipeline_wide_parameters ( ) [inherited]

Undocumented method

Code:
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Reimplemented from Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf.

public Bio::EnsEMBL::Compara::PipeConfig::PairAligner_conf::resource_classes ( ) [inherited]

Undocumented method

Code:
click to view

Reimplemented from Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf.


The documentation for this class was generated from the following file: