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Bio::EnsEMBL::Compara::Production::EPOanchors::FilterAnchors Class Reference
Inheritance diagram for Bio::EnsEMBL::Compara::Production::EPOanchors::FilterAnchors:

List of all members.


Class Summary

Definition at line 15 of file FilterAnchors.pm.

Available Methods

public Bio::EnsEMBL::Analysis analysis ()
public anchor_ids_with_zero_strand ()
public anchors2remove ()
public catch ()
public void check_if_exit_cleanly ()
public configure_defaults ()
public
Bio::EnsEMBL::DBSQL::DBConnection 
data_dbc ()
public dataflow_output_id ()
public
Bio::EnsEMBL::Hive::DBSQL::DBAdaptor 
db ()
public
Bio::EnsEMBL::DBSQL::DBConnection 
dbc ()
public Int debug ()
public void deprecate ()
public DESTROY ()
public fetch_input ()
public genome_db_ids ()
public get_params ()
public go_figure_dbc ()
public void info ()
public input_analysis_id ()
public input_id ()
public
Bio::EnsEMBL::Hive::AnalysisJob 
input_job ()
public max_number_of_dnafrags_hit ()
public max_number_of_hits_to_any_one_genome ()
public max_number_of_hits_to_same_dnafrag ()
public method_link_species_set_id ()
public new ()
public Array output ()
public param ()
public param_defaults ()
public param_substitute ()
public parameters ()
public Bio::EnsEMBL::Hive::Queen queen ()
public run ()
public Arrayref runnable ()
public Array stack_trace ()
public String stack_trace_dump ()
public strict_hash_format ()
public test_method_link_species_set_id ()
public void throw ()
public Depend try ()
public Int verbose ()
public warning ()
public worker ()
public worker_temp_directory ()
public write_output ()

Method Documentation

public Bio::EnsEMBL::Compara::Production::EPOanchors::FilterAnchors::anchor_ids_with_zero_strand ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Compara::Production::EPOanchors::FilterAnchors::anchors2remove ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Compara::Production::EPOanchors::FilterAnchors::configure_defaults ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Compara::Production::EPOanchors::FilterAnchors::fetch_input ( )

Undocumented method

Code:
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Reimplemented from Bio::EnsEMBL::Hive::Process.

public Bio::EnsEMBL::Compara::Production::EPOanchors::FilterAnchors::genome_db_ids ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Compara::Production::EPOanchors::FilterAnchors::get_params ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Compara::Production::EPOanchors::FilterAnchors::input_analysis_id ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Compara::Production::EPOanchors::FilterAnchors::max_number_of_dnafrags_hit ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Compara::Production::EPOanchors::FilterAnchors::max_number_of_hits_to_any_one_genome ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Compara::Production::EPOanchors::FilterAnchors::max_number_of_hits_to_same_dnafrag ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Compara::Production::EPOanchors::FilterAnchors::method_link_species_set_id ( )

Undocumented method

public Bio::EnsEMBL::Compara::Production::EPOanchors::FilterAnchors::run ( )

Undocumented method

Code:
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Reimplemented from Bio::EnsEMBL::Hive::Process.

public Bio::EnsEMBL::Compara::Production::EPOanchors::FilterAnchors::test_method_link_species_set_id ( )

Undocumented method

public Bio::EnsEMBL::Compara::Production::EPOanchors::FilterAnchors::write_output ( )

Undocumented method

Code:
click to view

Reimplemented from Bio::EnsEMBL::Hive::Process.


The documentation for this class was generated from the following file: