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Bio::EnsEMBL::Compara::Production::EPOanchors::RemoveAnchorOverlaps Class Reference
Inheritance diagram for Bio::EnsEMBL::Compara::Production::EPOanchors::RemoveAnchorOverlaps:

List of all members.


Class Summary

Definition at line 12 of file RemoveAnchorOverlaps.pm.

Available Methods

public Bio::EnsEMBL::Analysis analysis ()
public catch ()
public void check_if_exit_cleanly ()
public configure_defaults ()
public
Bio::EnsEMBL::DBSQL::DBConnection 
data_dbc ()
public dataflow_output_id ()
public
Bio::EnsEMBL::Hive::DBSQL::DBAdaptor 
db ()
public
Bio::EnsEMBL::DBSQL::DBConnection 
dbc ()
public Int debug ()
public void deprecate ()
public DESTROY ()
public fetch_input ()
public genome_db_ids ()
public get_params ()
public go_figure_dbc ()
public void info ()
public input_analysis_id ()
public input_id ()
public
Bio::EnsEMBL::Hive::AnalysisJob 
input_job ()
public input_method_link_species_set_id ()
public method_link_species_set_id ()
public new ()
public Array output ()
public overlapping_ancs_to_remove ()
public param ()
public param_defaults ()
public param_substitute ()
public parameters ()
public Bio::EnsEMBL::Hive::Queen queen ()
public run ()
public Arrayref runnable ()
public Array stack_trace ()
public String stack_trace_dump ()
public strict_hash_format ()
public void throw ()
public Depend try ()
public Int verbose ()
public warning ()
public worker ()
public worker_temp_directory ()
public write_output ()

Method Documentation

public Bio::EnsEMBL::Compara::Production::EPOanchors::RemoveAnchorOverlaps::configure_defaults ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Compara::Production::EPOanchors::RemoveAnchorOverlaps::fetch_input ( )

Undocumented method

Code:
click to view

Reimplemented from Bio::EnsEMBL::Hive::Process.

public Bio::EnsEMBL::Compara::Production::EPOanchors::RemoveAnchorOverlaps::genome_db_ids ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Compara::Production::EPOanchors::RemoveAnchorOverlaps::get_params ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Compara::Production::EPOanchors::RemoveAnchorOverlaps::input_analysis_id ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Compara::Production::EPOanchors::RemoveAnchorOverlaps::input_method_link_species_set_id ( )

Undocumented method

public Bio::EnsEMBL::Compara::Production::EPOanchors::RemoveAnchorOverlaps::method_link_species_set_id ( )

Undocumented method

public Bio::EnsEMBL::Compara::Production::EPOanchors::RemoveAnchorOverlaps::overlapping_ancs_to_remove ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Compara::Production::EPOanchors::RemoveAnchorOverlaps::run ( )

Undocumented method

Code:
click to view

Reimplemented from Bio::EnsEMBL::Hive::Process.

public Bio::EnsEMBL::Compara::Production::EPOanchors::RemoveAnchorOverlaps::write_output ( )

Undocumented method

Code:
click to view

Reimplemented from Bio::EnsEMBL::Hive::Process.


The documentation for this class was generated from the following file: