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Bio::EnsEMBL::Compara::Production::GenomicAlignBlock::FilterStack Class Reference

List of all members.


Class Summary

Definition at line 16 of file FilterStack.pm.

Available Methods

public assign_jobID_to_genomic_align_block ()
public delete_alignments ()
public void fetch_input ()
public filter_stack ()
public find_stack_coverage ()
public get_params ()
public print_gab ()
public print_params ()
public run ()
public write_output ()

Method Documentation

public Bio::EnsEMBL::Compara::Production::GenomicAlignBlock::FilterStack::assign_jobID_to_genomic_align_block ( )

Undocumented method

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public Bio::EnsEMBL::Compara::Production::GenomicAlignBlock::FilterStack::delete_alignments ( )

Undocumented method

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public void Bio::EnsEMBL::Compara::Production::GenomicAlignBlock::FilterStack::fetch_input ( )
    Title   :   fetch_input
    Usage   :   $self->fetch_input
    Function:   prepares global variables and DB connections
    Returns :   none
    Args    :   none
 
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public Bio::EnsEMBL::Compara::Production::GenomicAlignBlock::FilterStack::filter_stack ( )

Undocumented method

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public Bio::EnsEMBL::Compara::Production::GenomicAlignBlock::FilterStack::find_stack_coverage ( )

Undocumented method

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public Bio::EnsEMBL::Compara::Production::GenomicAlignBlock::FilterStack::get_params ( )

Undocumented method

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public Bio::EnsEMBL::Compara::Production::GenomicAlignBlock::FilterStack::print_gab ( )

Undocumented method

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public Bio::EnsEMBL::Compara::Production::GenomicAlignBlock::FilterStack::print_params ( )

Undocumented method

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public Bio::EnsEMBL::Compara::Production::GenomicAlignBlock::FilterStack::run ( )

Undocumented method

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public Bio::EnsEMBL::Compara::Production::GenomicAlignBlock::FilterStack::write_output ( )

Undocumented method

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The documentation for this class was generated from the following file: