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Bio::EnsEMBL::Compara::Production::Projection::DisplayProjection Class Reference
Inheritance diagram for Bio::EnsEMBL::Compara::Production::Projection::DisplayProjection:

List of all members.


Class Summary

Description

Data transfer object for holding the results of a projection.
 

Definition at line 13 of file DisplayProjection.pm.

Available Methods

public current_index ()
public entry ()
public from ()
public from_identity ()
public ignore ()
public new ()
public to ()
public to_identity ()
public total ()
public type ()

Method Documentation

public Bio::EnsEMBL::Compara::Production::Projection::DisplayProjection::current_index ( )
Current position of our iteration through the total amount of genes this
target is related to
 
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public Bio::EnsEMBL::Compara::Production::Projection::Projection::entry ( ) [inherited]
  Description : Getter. DBEntry object which was projected
 
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public Bio::EnsEMBL::Compara::Production::Projection::Projection::from ( ) [inherited]
  Description : Getter. The object instance from which we projected from (normally a Member)
 
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public Bio::EnsEMBL::Compara::Production::Projection::Projection::from_identity ( ) [inherited]
  Description : Getter. Percentage identity in the source
 
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public Bio::EnsEMBL::Compara::Production::Projection::DisplayProjection::ignore ( )
Attribute which can only be set after construction since it is used
to optionally allow us to ignore an existing projection during a post
filtering stage.
 
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public Bio::EnsEMBL::Compara::Production::Projection::DisplayProjection::new ( )
  Arg[-total]         : required; Total number of genes the target projected to
  Arg[-current_index] : required; Current position in the total
  Arg[..]             : See parent object for more information about other params
  Description         : New method used for a new instance of the given object. 
                        Required fields are indicated accordingly. Fields are 
                        specified using the Arguments syntax (case insensitive).
 
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Reimplemented from Bio::EnsEMBL::Compara::Production::Projection::Projection.

public Bio::EnsEMBL::Compara::Production::Projection::Projection::to ( ) [inherited]
  Description : Getter. The object instance from which we projected to (normally a Member)
 
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public Bio::EnsEMBL::Compara::Production::Projection::Projection::to_identity ( ) [inherited]
  Description : Getter. Percentage identity in the target
 
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public Bio::EnsEMBL::Compara::Production::Projection::DisplayProjection::total ( )
The current total of genes the target was mapped to (applies to 1:m) 
relationships
 
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public Bio::EnsEMBL::Compara::Production::Projection::Projection::type ( ) [inherited]
  Description : Getter. The type of homology which we detected (populated from homology.description)
 
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The documentation for this class was generated from the following file: