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Bio::EnsEMBL::DensityPlot::BinValueSet Class Reference
Inheritance diagram for Bio::EnsEMBL::DensityPlot::BinValueSet:

List of all members.


Class Summary

Synopsis

Description

 

Definition at line 13 of file BinValueSet.pm.

Available Methods

protected _rearrange ()
protected Biggest _store_biggest ()
protected Smallest _store_smallest ()
public add_binvalue ()
public Value color ()
public Array get_binvalues ()
public Value label ()
public Value label2 ()
public new ()
public Value position ()
public Scale_to_fit scale_to_fit ()
public Value shape ()
public size ()
public stack_trace ()
public stack_trace_dump ()
public Value stretch ()
public throw ()
public verbose ()
public warn ()

Method Documentation

protected Bio::EnsEMBL::Root::_rearrange ( ) [inherited]
Deprecated:
 
Code:
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protected Biggest Bio::EnsEMBL::DensityPlot::BinValueSet::_store_biggest ( )
 Title   : _store_biggest
 Usage   : $self->_store_biggest($newval)
 Function: internal method for storing the largest BinValue->value in this set.
 Returns : biggest value seen so far
 Args    : value
 
Code:
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protected Smallest Bio::EnsEMBL::DensityPlot::BinValueSet::_store_smallest ( )
 Title   : _store_smallest
 Usage   : $self->_store_smallest($newval)
 Function: internal method for storing the smallest BinValue->value in this set.
 Returns : smallest value seen so far
 Args    : value
 
Code:
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public Bio::EnsEMBL::DensityPlot::BinValueSet::add_binvalue ( )
 Title   : add_binValue
 Usage   :
 Function:
 Example :
 Returns : 
 Args    :
 
Code:
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public Value Bio::EnsEMBL::DensityPlot::BinValueSet::color ( )
 Title   : color
 Usage   : $obj->color($newval)
 Function: 
 Returns : value of color
 Args    : newvalue (optional)
 
Code:
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public Array Bio::EnsEMBL::DensityPlot::BinValueSet::get_binvalues ( )
 Title   : get_binvalues
 Usage   : my @binvalue_objects = $BVSet->get_binvalues
 Function: scales all the binvalues by the scale_factor and returns them.
 Example :
 Returns : array of BinValue objects 
 Args    : none
 
Code:
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public Value Bio::EnsEMBL::DensityPlot::BinValueSet::label ( )
 Title   : label
 Usage   : $obj->label($newval)
 Function: 
 Returns : value of label
 Args    : newvalue (optional)
 
Code:
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public Value Bio::EnsEMBL::DensityPlot::BinValueSet::label2 ( )
 Title   : label2
 Usage   : $obj->label2($newval)
 Function: 
 Returns : value of label2
 Args    : newvalue (optional)
 
Code:
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public Bio::EnsEMBL::DensityPlot::BinValueSet::new ( )

Undocumented method

Code:
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Reimplemented from Bio::EnsEMBL::Root.

public Value Bio::EnsEMBL::DensityPlot::BinValueSet::position ( )
 Title   : position
 Usage   : $obj->position($newval)
 Function: 
 Returns : value of position
 Args    : newvalue (optional)
 
Code:
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public Scale_to_fit Bio::EnsEMBL::DensityPlot::BinValueSet::scale_to_fit ( )
 Title   : scale_to_fit
 Usage   : $obj->scale_to_fit($newval)
 Function: gets/sets the number that the BinValues are to be scaled against -
 i.e. the greatest BinValue->value will be scaled to this number, and the rest
 scaled in proportion.
 Returns : scale_to_fit value
 Args    : newvalue (optional)
 
Code:
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public Value Bio::EnsEMBL::DensityPlot::BinValueSet::shape ( )
 Title   : shape
 Usage   : $obj->shape($newval)
 Function: 
 Returns : value of shape
 Args    : newvalue (optional)
 
Code:
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public Bio::EnsEMBL::DensityPlot::BinValueSet::size ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Root::stack_trace ( ) [inherited]
Deprecated:
 
Code:
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public Bio::EnsEMBL::Root::stack_trace_dump ( ) [inherited]
Deprecated:
 
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public Value Bio::EnsEMBL::DensityPlot::BinValueSet::stretch ( )
 Title   : stretch
 Usage   : $obj->stretch($newval)
 Function: gets/sets a boolean for whether we should stretch the data over the
 range (i.e. from min to max rather than absolute numbers).
 Returns : value of _stretch
 Args    : newvalue (optional)
 
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public Bio::EnsEMBL::Root::throw ( ) [inherited]
Deprecated:
 
Code:
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public Bio::EnsEMBL::Root::verbose ( ) [inherited]
Deprecated:
 
Code:
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public Bio::EnsEMBL::Root::warn ( ) [inherited]
Deprecated:
 
Code:
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The documentation for this class was generated from the following file: