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Bio::EnsEMBL::IdMapping::TinyTranslation Class Reference
Inheritance diagram for Bio::EnsEMBL::IdMapping::TinyTranslation:

List of all members.


Class Summary

Synopsis

  if ( my $tl = $tr-\>translation ) {
    my $lightweight_tl =
      Bio::EnsEMBL::IdMapping::TinyTranslation-\>new_fast( [
        $tl-\>dbID,          $tl-\>stable_id,
        $tl-\>version,       $tl-\>created_date,
        $tl-\>modified_date, $tr-\>dbID,
        $tr-\>translate-\>seq, ( $tr-\>is_known ? 1 : 0 ),
      ] );
  }

Description

This is a lightweight translation object for the stable Id mapping. See
the documentation in TinyFeature for general considerations about its
design.
 

Definition at line 27 of file TinyTranslation.pm.

Available Methods

public String created_date ()
public Int id ()
public Boolean is_known ()
public String modified_date ()
public
Bio::EnsEMBL::IdMapping::TinyFeature 
new_fast ()
public String seq ()
public String stable_id ()
public String to_string ()
public Int transcript_id ()
public Int version ()

Method Documentation

public String Bio::EnsEMBL::IdMapping::TinyFeature::created_date ( ) [inherited]
  Arg[1]      : (optional) String - the feature's stable Id creation date
  Description : Getter/setter for the feature's stable Id creation date.
  Return type : String
  Exceptions  : none
  Caller      : Bio::EnsEMBL::IdMapping::Cache
  Status      : At Risk
              : under development
 
Code:
click to view
public Int Bio::EnsEMBL::IdMapping::TinyFeature::id ( ) [inherited]
  Arg[1]      : (optional) Int - the feature's internal Id ("dbID")
  Description : Getter/setter for the feature's internal Id.
  Return type : Int
  Exceptions  : none
  Caller      : Bio::EnsEMBL::IdMapping::Cache
  Status      : At Risk
              : under development
 
Code:
click to view
public Boolean Bio::EnsEMBL::IdMapping::TinyTranslation::is_known ( )
  Arg[1]      : (optional) Boolean - the translation's "known" status
  Description : Getter/setter for the translation's "known" status.
  Return type : Boolean
  Exceptions  : none
  Caller      : general
  Status      : At Risk
              : under development
 
Code:
click to view
public String Bio::EnsEMBL::IdMapping::TinyFeature::modified_date ( ) [inherited]
  Arg[1]      : (optional) String - the feature's stable Id modification date
  Description : Getter/setter for the feature's stable Id modification date.
  Return type : String
  Exceptions  : none
  Caller      : Bio::EnsEMBL::IdMapping::Cache
  Status      : At Risk
              : under development
 
Code:
click to view
public Bio::EnsEMBL::IdMapping::TinyFeature Bio::EnsEMBL::IdMapping::TinyFeature::new_fast ( ) [inherited]
  Arg[1]      : Arrayref $array_ref - the arrayref to bless into the new object 
  Description : Constructor.
  Return type : Bio::EnsEMBL::IdMapping::TinyFeature implementing class
  Exceptions  : none
  Caller      : Bio::EnsEMBL::IdMapping::Cache
  Status      : At Risk
              : under development
 
Code:
click to view
public String Bio::EnsEMBL::IdMapping::TinyTranslation::seq ( )
  Arg[1]      : (optional) String - the translation's sequence
  Description : Getter/setter for the translation's sequence.
  Return type : String
  Exceptions  : none
  Caller      : general
  Status      : At Risk
              : under development
 
Code:
click to view
public String Bio::EnsEMBL::IdMapping::TinyFeature::stable_id ( ) [inherited]
  Arg[1]      : (optional) String - the feature's stable Id
  Description : Getter/setter for the feature's stable Id.
  Return type : String
  Exceptions  : none
  Caller      : Bio::EnsEMBL::IdMapping::Cache
  Status      : At Risk
              : under development
 
Code:
click to view
public String Bio::EnsEMBL::IdMapping::TinyFeature::to_string ( ) [inherited]
  Example     : print LOG "Created ", $f->to_string, "\\n";
  Description : Prints a string representation of the feature for debug
                purposes.
  Return type : String
  Exceptions  : none
  Caller      : general
  Status      : At Risk
              : under development
 
Code:
click to view
public Int Bio::EnsEMBL::IdMapping::TinyTranslation::transcript_id ( )
  Arg[1]      : (optional) Int - the transcript internal Id ("dbID")
  Description : Getter/setter for the transcript internal Id this translation is
                attached to.
  Return type : Int
  Exceptions  : none
  Caller      : general
  Status      : At Risk
              : under development
 
Code:
click to view
public Int Bio::EnsEMBL::IdMapping::TinyFeature::version ( ) [inherited]
  Arg[1]      : (optional) Int - the feature's stable Id version
  Description : Getter/setter for the feature's stable Id version.
  Return type : Int
  Exceptions  : none
  Caller      : Bio::EnsEMBL::IdMapping::Cache
  Status      : At Risk
              : under development
 
Code:
click to view

The documentation for this class was generated from the following file: