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Bio::EnsEMBL::Mapper::IndelPair Class Reference
Inheritance diagram for Bio::EnsEMBL::Mapper::IndelPair:

List of all members.


Class Summary

Synopsis

Description

Two regions mapped between different coordinate systems are each
represented by a Bio::EnsEMBL::Mapper::Unit and joined together as a
Bio::EnsEMBL::Mapper::Pair, when one of the regions is an indel.
 

Definition at line 15 of file IndelPair.pm.

Available Methods

public from ()
public new ()
public ori ()
public to ()

Method Documentation

public Bio::EnsEMBL::Mapper::Pair::from ( ) [inherited]
  Arg  1      Bio::EnsEMBL::Mapper::Unit $seqobj
	      from and to represent the two regions
	      which are mapped to each other
  Function    accessor method
  Returntype  Bio::EnsEMBL::Mapper::Unit
  Exceptions  none
  Caller      Bio::EnsEMBL::Mapper::Pair
  Status     : Stable
 
Code:
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public Bio::EnsEMBL::Mapper::IndelPair::new ( )

Undocumented method

Code:
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Reimplemented from Bio::EnsEMBL::Mapper::Pair.

public Bio::EnsEMBL::Mapper::Pair::ori ( ) [inherited]
  Arg  1      Bio::EnsEMBL::Mapper::Unit $ori
  Function    accessor method
	      relative orientation of the the
	      two mapped regions
  Returntype  Bio::EnsEMBL::Mapper::Unit
  Exceptions  none
  Caller      Bio::EnsEMBL::Mapper::Pair
  Status     : Stable
 
Code:
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public Bio::EnsEMBL::Mapper::Pair::to ( ) [inherited]
  Arg  1      Bio::EnsEMBL::Mapper::Unit $seqobj
	      from and to represent the two regions
	      which are mapped to each other
  Function    accessor method
  Returntype  Bio::EnsEMBL::Mapper::Unit
  Exceptions  none
  Caller      Bio::EnsEMBL::Mapper::Pair
  Status     : Stable
 
Code:
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The documentation for this class was generated from the following file: