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Bio::EnsEMBL::Utils::VegaCuration::Transcript Member List
This is the complete list of members for Bio::EnsEMBL::Utils::VegaCuration::Transcript, including all inherited members.
_by_chr_num()Bio::EnsEMBL::Utils::ConversionSupport
_get_attrib_id()Bio::EnsEMBL::Utils::ConversionSupport
allowed_params()Bio::EnsEMBL::Utils::ConversionSupport
check_names_and_overlap()Bio::EnsEMBL::Utils::VegaCuration::Transcript
check_remarks_and_update_names()Bio::EnsEMBL::Utils::VegaCuration::Transcript
check_required_params()Bio::EnsEMBL::Utils::ConversionSupport
comma_to_list()Bio::EnsEMBL::Utils::ConversionSupport
commify()Bio::EnsEMBL::Utils::ConversionSupport
confirm_params()Bio::EnsEMBL::Utils::ConversionSupport
create_commandline_options()Bio::EnsEMBL::Utils::ConversionSupport
date()Bio::EnsEMBL::Utils::ConversionSupport
date_and_mem()Bio::EnsEMBL::Utils::ConversionSupport
date_format()Bio::EnsEMBL::Utils::ConversionSupport
dba()Bio::EnsEMBL::Utils::ConversionSupport
dynamic_use()Bio::EnsEMBL::Utils::ConversionSupport
error()Bio::EnsEMBL::Utils::ConversionSupport
fetch_non_hidden_slices()Bio::EnsEMBL::Utils::ConversionSupport
filehandle()Bio::EnsEMBL::Utils::ConversionSupport
find_gaps()Bio::EnsEMBL::Utils::VegaCuration::Gene
find_non_overlaps()Bio::EnsEMBL::Utils::VegaCuration::Transcript
finish_log()Bio::EnsEMBL::Utils::ConversionSupport
fix_attrib_value()Bio::EnsEMBL::Utils::ConversionSupport
get_attrib_values()Bio::EnsEMBL::Utils::ConversionSupport
get_chrlength()Bio::EnsEMBL::Utils::ConversionSupport
get_common_params()Bio::EnsEMBL::Utils::ConversionSupport
get_database()Bio::EnsEMBL::Utils::ConversionSupport
get_dbconnection()Bio::EnsEMBL::Utils::ConversionSupport
get_ensembl_chr_mapping()Bio::EnsEMBL::Utils::ConversionSupport
get_havana_fragmented_loci_comments()Bio::EnsEMBL::Utils::VegaCuration::Transcript
get_loutre_params()Bio::EnsEMBL::Utils::ConversionSupport
get_non_hidden_slice_names()Bio::EnsEMBL::Utils::ConversionSupport
get_species_scientific_name()Bio::EnsEMBL::Utils::ConversionSupport
get_taxonomy_id()Bio::EnsEMBL::Utils::ConversionSupport
get_unique_genes()Bio::EnsEMBL::Utils::ConversionSupport
get_wanted_chromosomes()Bio::EnsEMBL::Utils::ConversionSupport
init_log()Bio::EnsEMBL::Utils::ConversionSupport
list_all_params()Bio::EnsEMBL::Utils::ConversionSupport
list_or_file()Bio::EnsEMBL::Utils::ConversionSupport
log()Bio::EnsEMBL::Utils::ConversionSupport
log_error()Bio::EnsEMBL::Utils::ConversionSupport
log_filehandle()Bio::EnsEMBL::Utils::ConversionSupport
log_stamped()Bio::EnsEMBL::Utils::ConversionSupport
log_verbose()Bio::EnsEMBL::Utils::ConversionSupport
log_warning()Bio::EnsEMBL::Utils::ConversionSupport
mem()Bio::EnsEMBL::Utils::ConversionSupport
new()Bio::EnsEMBL::Utils::ConversionSupport
param()Bio::EnsEMBL::Utils::ConversionSupport
parse_common_options()Bio::EnsEMBL::Utils::ConversionSupport
parse_extra_options()Bio::EnsEMBL::Utils::ConversionSupport
read_user_input()Bio::EnsEMBL::Utils::ConversionSupport
remove_vega_params()Bio::EnsEMBL::Utils::ConversionSupport
serverroot()Bio::EnsEMBL::Utils::ConversionSupport
sort_chromosomes()Bio::EnsEMBL::Utils::ConversionSupport
species()Bio::EnsEMBL::Utils::ConversionSupport
split_chromosomes_by_size()Bio::EnsEMBL::Utils::ConversionSupport
store_new_attribute()Bio::EnsEMBL::Utils::ConversionSupport
update_attribute()Bio::EnsEMBL::Utils::ConversionSupport
user_confirm()Bio::EnsEMBL::Utils::ConversionSupport
user_proceed()Bio::EnsEMBL::Utils::ConversionSupport
warnings()Bio::EnsEMBL::Utils::ConversionSupport